Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m10
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53336-1|AAA96174.1|  158|Caenorhabditis elegans Temporarily ass...    31   0.71 
AF303253-1|AAG50211.1|  158|Caenorhabditis elegans tissue inhibi...    31   0.71 
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>U53336-1|AAA96174.1|  158|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 225 protein.
          Length = 158

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
 Frame = +3

Query: 264 LTLALVAASCRVASACTCALEHPQTHYCKSDFV----IVGRVQKTF--RGREDYDI---- 413
           L+L +++    V  AC C  +  +  +C + +V    +  RV K     G E   +    
Sbjct: 6   LSLVILSVLIAVTLACKCREQSTKESFCNAHWVSHVKVKVRVGKQGLPEGSERKGLNNLR 65

Query: 414 YKVKIRNVFKATDKAVAALRSGRLFTPPHESLCGVSLQPRETYVITGQVLHLEA-HIYLC 590
           Y V+   VFK             +FTP     CG+ +     Y++ G+V    A +  LC
Sbjct: 66  YTVQHVEVFKKPSNMTTL--PDEIFTPSEAPACGLKIAAGHEYLLAGRVEGPNALYTVLC 123

Query: 591 GYI 599
           G +
Sbjct: 124 GQV 126


>AF303253-1|AAG50211.1|  158|Caenorhabditis elegans tissue inhibitor
           of metalloproteinase2 protein.
          Length = 158

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
 Frame = +3

Query: 264 LTLALVAASCRVASACTCALEHPQTHYCKSDFV----IVGRVQKTF--RGREDYDI---- 413
           L+L +++    V  AC C  +  +  +C + +V    +  RV K     G E   +    
Sbjct: 6   LSLVILSVLIAVTLACKCREQSTKESFCNAHWVSHVKVKVRVGKQGLPEGSERKGLNNLR 65

Query: 414 YKVKIRNVFKATDKAVAALRSGRLFTPPHESLCGVSLQPRETYVITGQVLHLEA-HIYLC 590
           Y V+   VFK             +FTP     CG+ +     Y++ G+V    A +  LC
Sbjct: 66  YTVQHVEVFKKPSNMTTL--PDEIFTPSEAPACGLKIAAGHEYLLAGRVEGPNALYTVLC 123

Query: 591 GYI 599
           G +
Sbjct: 124 GQV 126


>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
            F21G4.6 protein.
          Length = 1885

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
 Frame = +3

Query: 33   VSENIEPTLRESIYDLSNIINFQ---IDNFLQRFFQTNNIKSC--VFVVVRVRLYRSR-- 191
            ++E IE  L  S    + +INF    +D+     F  +N   C  V+ ++ V   R +  
Sbjct: 1707 IAEGIEQLLCRSNEFNNEVINFVLVGVDSGDATPFPADNEYYCRAVYRILMVAATREKVA 1766

Query: 192  NDPQLLNRWQSTSSDIGYNMLMRWLTLALVAASCRVASACTCALEHPQTHYCKSDFVIVG 371
            ND   + R  +    IG++ML R  T   ++ +    S C   +E   + Y +  FVI G
Sbjct: 1767 NDEVSMTRIYNALQIIGFDMLSRGETAPAISRTLPFFSICVNGVETTISKYIER-FVING 1825


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,616
Number of Sequences: 27780
Number of extensions: 323346
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)