Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m10
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   3.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 387 FRGREDYDIYKVKIRNVFKATDKAVAALRSGRLFTPPHESL 509
           F+G E  D    ++     + DK ++   +G    PPH+ L
Sbjct: 774 FKGMETQDYRIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQL 814


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 60  RESIYDLSNIINFQIDNFLQRFFQTNNIKSCVFVVVR 170
           + ++Y      N +ID +++R  Q   +K C+ V +R
Sbjct: 217 KNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMR 253


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 60  RESIYDLSNIINFQIDNFLQRFFQTNNIKSCVFVVVR 170
           + ++Y      N +ID +++R  Q   +K C+ V +R
Sbjct: 14  KNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMR 50


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 633 FFDVVSPPAIWQCTRRGKYAL 571
           ++ V+ P  +W   +RGK  L
Sbjct: 137 YYAVIKPLQLWDVDKRGKIML 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,542
Number of Sequences: 438
Number of extensions: 4094
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)