Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5l14
         (587 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   1.0  
CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein ...    25   1.4  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   2.4  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   7.3  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +3

Query: 300 ETKVKIEEMNKMVQTQKEAVIK 365
           +TK +IEE+NK ++T ++ +++
Sbjct: 738 QTKEEIEELNKKIETLQKTIVE 759


>CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein
           protein.
          Length = 207

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 55  SFCVFSIWRVRPKESNSS*LLKNALRRKSARQGSEKRNA*SRPRRR 192
           +F   +I R RP++SN S + K   +R+ A + +      +RP RR
Sbjct: 17  NFTKSAINRKRPEKSNGSTVKKTIRKRRPALRSTSGVLRAARPERR 62


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 65  CFRYGESDPRNPTAPSC*KTRCGESQRGKEAKS 163
           CFR  +S PR  ++ S   T+ G +  G  A S
Sbjct: 439 CFRRADSAPRGSSSSSSSATKAGAAGAGGTAGS 471


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 98   PTAPSC*KTRCGESQRGKEAKSETPKAGQGGG 193
            P AP+   T+  E +    A  + P++  GGG
Sbjct: 1537 PPAPATATTKSVEREEPVRASGKAPESESGGG 1568


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,119
Number of Sequences: 2352
Number of extensions: 7851
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56347938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)