Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5l14
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    80   1e-15
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical ...    27   7.5  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 48/116 (41%), Positives = 62/116 (53%)
 Frame = +3

Query: 75  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 254
           MASQTQGIQQLLAAEKRAAEK++                   EV                
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQ 60

Query: 255 KHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 422
           +++GT+E + +KI  +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 61  QYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 193 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 303
           + +K  S   S K  SS+ LKP T++P     P SMP+
Sbjct: 3   INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40


>AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical
           protein W03G9.5 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = +1

Query: 76  WRVRPKESNSS*LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKP 255
           W+ + +E+N   LLKNA   ++AR+  E            K KL+ST  S   S+K+ + 
Sbjct: 419 WKKKEEEANKEKLLKNA---RAARRAKEDFIV-PEDNTVQKRKLESTQLSSAVSTKSTRS 474

Query: 256 STWVPGKVLRPRS 294
              +  K+L P+S
Sbjct: 475 ---IGKKILPPKS 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,144,603
Number of Sequences: 27780
Number of extensions: 191244
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)