Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5l10
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 35 0.010
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 29 0.50
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 2.0
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 27 2.6
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 2.6
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 3.5
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 3.5
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 4.6
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 26 4.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 6.1
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 8.1
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 25 8.1
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 34.7 bits (76), Expect = 0.010
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 321 ERAACNDEYHLSEYVKEEIGWRTADKIFDIKRTFKNAVELGASRGYVSRHFLPDSVEKVT 500
E +EY E++K + RT D+++DI R + V G V +H L +K+
Sbjct: 370 EEEPTTEEYE-EEFLKTYVP-RTLDEVYDIDRDTE-IVNAGGVNSLVYKHLLNTDFQKLD 426
Query: 501 LCDTSRTHLDKAIVGE 548
L DT++ D+ + E
Sbjct: 427 LNDTTKNQNDQILPNE 442
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 29.1 bits (62), Expect = 0.50
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Frame = +3
Query: 192 AKNIQADIRNIVQNSSYAAKQKTASSIYRTMNIF-DR---------KTKMIQRERAACND 341
A+N+Q D+ + S K + + +Y + N+F D+ +TK++ ERA ++
Sbjct: 360 AENVQGDLIFTCEISLTVLKHEIRTKLYNSNNVFLDKGQKGVISNIQTKILNFERAIPSE 419
Query: 342 EYHLSEYVKEEIGWRTADKIFDIKRTFKNA---VELGASRGYVSRHFLPDSVEKVTLC-D 509
H E +K G +++ IK+ F A + L + + DS+E +C
Sbjct: 420 MKHYFEILKAGNG--LPEELDIIKQHFFTACVEIYLSYCNTLIYLYLADDSIEGSKICLS 477
Query: 510 TSRTHLD 530
T+R +D
Sbjct: 478 TARAAID 484
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 282 MNIFDRKTKMIQRERAACNDEYHLSEYVKEE--IGWRTADKIFDIKRTFKNAVEL 440
M I + K ++QR+ DE +SE +EE + + F++ K A+EL
Sbjct: 658 MEILNDKISVLQRQLTDVKDELDVSEEEREEAIVAGQKLSASFELMSNEKQALEL 712
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 463 DTYPREAPSSTAFLNVLLMSNILSAVR 383
D YPR P STA L+V L+S + S R
Sbjct: 580 DDYPRAQPPSTAELHVDLLSWMTSFTR 606
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 463 DTYPREAPSSTAFLNVLLMSNILSAVRQPISS 368
+T E PSS + +NV +++ + S RQ ISS
Sbjct: 156 NTASHEVPSSKSDVNVQMLARLKSKSRQKISS 187
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 219 FVYLPVYFLHSIPIKNDVNLD 157
F+Y P+Y +H PI +++NL+
Sbjct: 48 FLY-PIYLIHGQPIDDEINLE 67
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 167 TSFFIGIECKKYTGRYTKHRSK*FV 241
+SF++G+ CK Y KH K +V
Sbjct: 77 SSFYLGVICKLYEKAIDKHSGKKYV 101
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 582 PHPLSSFHIERPHQLLPYRDEFWMCHTVSPS 490
P+PL + H+ L YRD+ + H V+PS
Sbjct: 251 PYPLDASHLSSQQLLSMYRDQ--VSHGVTPS 279
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 370 SLTYSDKWYSSLQAALSLCIILV-FLSNIFIVRY 272
S+ S W+ + + LS+C + + FL+ IF R+
Sbjct: 78 SINTSRSWFRAFLSFLSICFLFISFLNFIFSTRF 111
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 363 VKEEIGWRTADKIFDIKRTFKNAVELGASR 452
VKE I R + + D+ KNAV G +R
Sbjct: 315 VKESIELRPEEAVIDVDELDKNAVLFGGTR 344
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = -1
Query: 582 PHPL-----SSFHIERPHQLLPY--RDEFWMCHTVSPSPRCPAGNAVIHIHERLP 439
PHP S+F P L P RD + T+SPS A ++ IH+R+P
Sbjct: 355 PHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFSAYSSSHGIHQRIP 409
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -2
Query: 314 YHLSFPIKYIHRSVYRTCSLLFCCIRTILNDVSYI 210
Y+LSF I + S++ + +LF +++L+ + +I
Sbjct: 9 YNLSFFISFTFSSIFFSSLILFLVYKSVLSKLFFI 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,812
Number of Sequences: 5004
Number of extensions: 41895
Number of successful extensions: 116
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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