Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5l10
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0640 - 5391407-5391523,5391659-5391748,5391837-5391901,539...    33   0.17 
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...    29   2.0  
11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604...    28   6.2  
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922...    27   8.2  

>12_01_0640 -
           5391407-5391523,5391659-5391748,5391837-5391901,
           5392201-5392288,5392511-5392589,5393232-5393370,
           5393530-5393863
          Length = 303

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 282 MNIFDRKTKMIQRERAACNDEYHLSEYVKEEIGWRTADKIFDIKRTFKNAVELGASRGYV 461
           + IFDR  K   R+RAA       ++ + + +     D++ D ++ F +A+ LG S G V
Sbjct: 47  VKIFDRDLKRRHRDRAAW--AMGETDALADAVADNLLDRLEDCRKAFPSALCLGGSAGAV 104

Query: 462 SRHFL-PDSVEKVTLCDTS 515
            R       +EK+ + D S
Sbjct: 105 RRSLRGRGGIEKLIMMDMS 123


>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 252 QKTASSIYRTMNIFDRKTKMIQRERAACND--EYHLSEYVKEEIG 380
           +K  SSI+   N+F RK K+++  +       E H  +Y KE+IG
Sbjct: 198 EKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH-GDYAKEDIG 241


>11_04_0224 +
           15059904-15059910,15059955-15060185,15060345-15060424,
           15060497-15060547,15060548-15060670,15062151-15062184,
           15062363-15062441,15062779-15062848,15075787-15075889,
           15076247-15076284,15076449-15076550,15077027-15077107,
           15077506-15077657,15077731-15077857,15078193-15078311,
           15078636-15078749,15079001-15079214
          Length = 574

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -2

Query: 281 RSVYRTCSLLFCCIRTILNDVSYICLYIFCIRSQ 180
           RS+Y  C+  +CC    +N+ + + L+ + ++S+
Sbjct: 18  RSIYIMCAQYYCCRYVEVNESTSVRLFYYFVKSE 51


>03_02_0529 +
           9218734-9218793,9218898-9220050,9220133-9220192,
           9220284-9220363,9220486-9220730,9220815-9221138,
           9221211-9221274,9221968-9222144
          Length = 720

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 240 YAAKQKTASSIYRTMNIFDRKTKMIQRERAACNDEY 347
           Y  +Q+T  S ++   +FDR +  +  E A  N ++
Sbjct: 358 YYTRQRTQRSTFKRRKMFDRHSAQVSEEYAKANTKF 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,122,634
Number of Sequences: 37544
Number of extensions: 236422
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)