Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5l07
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   269   2e-73
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.24 
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    28   0.96 
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    28   1.3  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.3  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   2.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.9  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    26   5.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   6.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   9.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.0  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  269 bits (660), Expect = 2e-73
 Identities = 122/180 (67%), Positives = 149/180 (82%)
 Frame = +2

Query: 74  MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 253
           M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 254 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 433
           +F +   +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61  KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120

Query: 434 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 613
           + FRGLF+ID K  LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW  G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 544 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 416
           L Q Q L  +    ++ D DL PEV  ++ +EES  G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 606 LAPGLQLAGHTSPCLSVNWN 547
           L P  +L  HT PC SV WN
Sbjct: 174 LKPKYRLTKHTQPCTSVCWN 193


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
 Frame = +2

Query: 2   ISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLS 157
           +S    S   S F+Y     SF++     T  +P+   TA+            FK    +
Sbjct: 26  LSPIGDSKNTSSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTT 85

Query: 158 DYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 265
            YK      F +  D+T   PT  +  S+  DEF K
Sbjct: 86  SYKD-----FVFSRDYTNWTPTFWVLLSQLIDEFLK 116


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 470 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEV 577
           +NL++I +  LPVG  +++   LR V     T K+G++
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDI 129


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 95  PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 226
           P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = -1

Query: 285  PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 106
            P TS  +L +S+  + + +++   T + S    N  T  P+ S   ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
 Frame = +2

Query: 77  PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 217
           P+ + KPA      +T  V     DI+L D  G           K +V+F YP   T  C
Sbjct: 30  PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89

Query: 218 PTEIIAFSEKADEFRKIGCEVLGASTDS 301
             +   F +   + +    EVLG S D+
Sbjct: 90  TKQGCGFRDNYPKIQASDYEVLGLSFDT 117


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 337 QAGRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 501
           +A R+  H H +   +   H  R  S   G  H    +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 50  SKVFSFNKMPLQMTKPAPQFKATAVVN 130
           S +FSFN      TKP+P   +T   N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 344 GGLGPMNIPLISDKS 388
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,596
Number of Sequences: 5004
Number of extensions: 40301
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)