Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5l05
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.044
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 31 0.18
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 27 2.9
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 2.9
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 27 2.9
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 26 3.8
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 26 5.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.1
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 25 6.7
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 8.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.9
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.7 bits (71), Expect = 0.044
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 321 SNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSG 479
+N L G +P + +F +PQ SP N V+ +PS + + K K G
Sbjct: 898 ANKYPLNNGANVPALLNSFSSPQLSPLVNRVLNEPSSSPLSSSSLKSPLSKEG 950
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 30.7 bits (66), Expect = 0.18
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +3
Query: 306 IQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTP 485
++K+ SNL GL G + + +P F A Y+ + N + P+ + + TK V +
Sbjct: 582 LKKKASNLEGLQEGFEADVSDPRFAA-LYTNH--NFALDPTNPHFKR--TKTVEKIMDES 636
Query: 486 AKKMTDTFFQTQVTRPEI 539
K+ ++ QTQ +PE+
Sbjct: 637 RKRRSNQLEQTQDGKPEL 654
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 2.9
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 345 GTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTPAKKMTDTFFQTQV 524
G ++ + + G + Y V +P TY + + G + D F Q+
Sbjct: 119 GPRMEEMKASGGLVESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVESEPDHPFSQQL 178
Query: 525 TRPEIDSVDYAITHF--GINIFKQITSSQPG 611
+ E D +D+AI I ++KQ S G
Sbjct: 179 EQDEADKLDFAIQEVKKTIEMYKQQVQSLQG 209
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +3
Query: 306 IQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTP 485
++ L N L I K+P P+ Y P A + + S T ++ K P + P
Sbjct: 873 VETVLEKFNDLKIENKVPETAPDVVPSSYPPAAES-NVSVSSDTSTKDVEKQEPSSAEQP 931
Query: 486 AKKMTDT 506
A+ + ++
Sbjct: 932 AQGIAES 938
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 417 IQPSIQTYNQETTKIVPQKSGTPAKKMTDTFFQTQVTRPEIDSVDY 554
IQP I E T+I+ + G +KM D + ++ PE DY
Sbjct: 442 IQPIIN--GNEITRILGIRPGPHLRKMLDDSIEWRIQNPESTKEDY 485
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 369 PNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTPAKKMTDTFFQT 518
P G P+++ A V+ +P+ +++ + SGT A + +F +T
Sbjct: 72 PIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIET 121
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Frame = +3
Query: 219 TQNQYPKYDSTINSDQIYFDDNRP-SGSINIQKELSNLNGLTIGTKIPII-----NPNFG 380
T +++ I +D D RP SG +++ + + + + I+
Sbjct: 11 THKSITEFEPAIRNDGRSIDQLRPLSGQVDVLPGTNGSARVKWASSVEIVIGVKAEVGDA 70
Query: 381 APQYSPYANNVIIQPSIQTYNQETTKI 461
P+ Y +V I PS+ N+ET +I
Sbjct: 71 TPEGGKYVASVEISPSVSIQNRETDEI 97
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 5.1
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -2
Query: 515 LKKRICHLFSWC 480
LKK+IC++ +WC
Sbjct: 2414 LKKKICYILAWC 2425
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 152 HDEIYTCFIHTGVFFSFASSN 90
H ++Y+ FIHTG+ +SS+
Sbjct: 70 HPDLYSTFIHTGIATIVSSSD 90
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 608 WLTACYLLKYIYSKMCYSIIDTIDLGSCYLRL 513
W+T YLL + K +S + +DLG +L
Sbjct: 261 WITINYLLGTLGGKATHSTVAVMDLGGASTQL 292
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 231 YPKYDSTINSDQIYFDD 281
YPK++ I ++YFDD
Sbjct: 1184 YPKFELRIKHPKVYFDD 1200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,726
Number of Sequences: 5004
Number of extensions: 50879
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -