Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5l05
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936... 31 0.56
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 29 2.3
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 29 3.0
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 28 5.2
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 5.2
03_06_0191 - 32228642-32228949,32229028-32230567 28 5.2
01_03_0184 + 13560830-13562981,13563604-13564088 28 5.2
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 9.2
>01_05_0532 -
22992520-22992879,22993323-22993403,22993565-22993639,
22994140-22994301
Length = 225
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 336 LTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTPAKKMTDTFFQ 515
L G P ++P +P+AN+ I QPS +Y Q T P+ S + K +T F
Sbjct: 109 LDYGGNDPHVSPRVHQHSANPFANSSI-QPSAGSYGQATVGFAPRPSISDQSK--NTIFS 165
Query: 516 TQVTRP 533
++ P
Sbjct: 166 NALSSP 171
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 486 AKKMTDTFFQTQVTRPEIDSV-DYAITHFGINIFKQITSSQP 608
AK + D F QVTR E+DS DYA +F + + ++S P
Sbjct: 1341 AKTLDDRFVIKQVTRTELDSFEDYAAEYFKY-LTESVSSGSP 1381
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 29.1 bits (62), Expect = 3.0
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Frame = +3
Query: 360 IINPNFGAPQYSPYA--NNV---IIQPS-IQTYNQETTKIVPQKSGTPAKKMTDTFFQTQ 521
+I +F Q P A NV +I PS + T K + +K GTPAKK + +
Sbjct: 274 VIEDSFVTDQSGPEAISENVSLKLIPPSDMSVQTSSTLKDLVKKEGTPAKK-SICILRND 332
Query: 522 VTRPEIDSVDY-AITHFGINIFKQITS 599
V + S ++ + H GIN+ K S
Sbjct: 333 VKKNLPSSAEFDGLNHNGINMVKTCLS 359
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 486 AKKMTDTFFQTQVTRPEIDSVDYAITHFGINIFKQITSSQP 608
AK M + F QVT+ E+DS H+ ++ + +TS P
Sbjct: 1408 AKTMDERFIIKQVTKTELDSFIGFAPHYFRHLAESLTSRSP 1448
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 345 GTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQ 470
G + +PN PQ+ + + IQP++Q NQ+ + Q
Sbjct: 379 GVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQNASQ 420
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 417 IQPSIQTYNQETTKIVPQKSGTPAKKMTDTFFQTQVTRPEIDSVDYAITHF 569
++P I +YN + + PAKK+ D F T P + + + IT F
Sbjct: 391 LEPDISSYNSLMESLCRKNLLRPAKKLWDEMF-TSGCSPNLQTYNILITKF 440
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 229 SIPNTIPQSIQIKFILTTTDLVALLIFKRNYLI 327
SIP T P+ I ++FI+ LL+ +++
Sbjct: 722 SIPTTTPKKIDVRFIVVVISYATLLVIDVRFIV 754
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 384 PQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTPAKKMTDTFFQTQVTRP 533
P Y+PY Q Y Q T+I PQ + A + + Q QV +P
Sbjct: 261 PGYNPYMQQYQQYGQYQQYTQPQTQIAPQ-NVAQAPAQSAPYAQPQVLQP 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,984
Number of Sequences: 37544
Number of extensions: 268685
Number of successful extensions: 556
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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