Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5l05
         (624 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic dy...    33   0.31 
BT025964-1|ABG02208.1| 1312|Drosophila melanogaster IP16365p pro...    33   0.31 
AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,...    33   0.31 
AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,...    33   0.31 
AE013599-1761|AAF58340.2| 1093|Drosophila melanogaster CG6280-PA...    31   1.7  
AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-P...    28   8.9  

>L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic
           dynein heavy chian protein.
          Length = 4639

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 300 INIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSG 479
           I + KE+ N+  L     + I+N    A Q  PYA ++I   S++TY +   KI  + S 
Sbjct: 738 ITLAKEVRNIKNLGFRVPLTIVNKAHQANQIYPYAISLI--ESVRTYERTLEKIEDRASI 795

Query: 480 TP 485
            P
Sbjct: 796 VP 797


>BT025964-1|ABG02208.1| 1312|Drosophila melanogaster IP16365p
           protein.
          Length = 1312

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 300 INIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSG 479
           I + KE+ N+  L     + I+N    A Q  PYA ++I   S++TY +   KI  + S 
Sbjct: 738 ITLAKEVRNIKNLGFRVPLTIVNKAHQANQIYPYAISLI--ESVRTYERTLEKIEDRASI 795

Query: 480 TP 485
            P
Sbjct: 796 VP 797


>AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,
           isoform B protein.
          Length = 3388

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 300 INIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSG 479
           I + KE+ N+  L     + I+N    A Q  PYA ++I   S++TY +   KI  + S 
Sbjct: 738 ITLAKEVRNIKNLGFRVPLTIVNKAHQANQIYPYAISLI--ESVRTYERTLEKIEDRASI 795

Query: 480 TP 485
            P
Sbjct: 796 VP 797


>AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,
           isoform A protein.
          Length = 4639

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 300 INIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSG 479
           I + KE+ N+  L     + I+N    A Q  PYA ++I   S++TY +   KI  + S 
Sbjct: 738 ITLAKEVRNIKNLGFRVPLTIVNKAHQANQIYPYAISLI--ESVRTYERTLEKIEDRASI 795

Query: 480 TP 485
            P
Sbjct: 796 VP 797


>AE013599-1761|AAF58340.2| 1093|Drosophila melanogaster CG6280-PA
           protein.
          Length = 1093

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 357 PIINPNFGAPQYSPYANNVIIQPSIQ-TYNQETTKIVPQKSGTPAKKMTDTFFQTQVTRP 533
           P   PN   P+   YA    ++P+ Q  Y QE ++++PQ+   P ++ ++      ++ P
Sbjct: 472 PPQRPNPRTPKEGDYAGQ-FVKPAAQLAYQQELSQVIPQEQSKP-QQQSELLHTKAISSP 529

Query: 534 EIDSVDYA 557
             D   Y+
Sbjct: 530 APDVQQYS 537


>AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-PA
           protein.
          Length = 1988

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/54 (20%), Positives = 26/54 (48%)
 Frame = +3

Query: 285 RPSGSINIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQ 446
           +P   +N+  +L     + + +  P++NP+    Q SP    + +Q +   ++Q
Sbjct: 221 QPPLLLNLVNQLPKHRAMCVSSDSPLVNPHGTVHQVSPSPQRIPVQQTTNVFSQ 274


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,352,797
Number of Sequences: 53049
Number of extensions: 505068
Number of successful extensions: 1161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)