Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5l05
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AL033510-3|CAA22066.1|  323|Caenorhabditis elegans Hypothetical ...    31   0.51 
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr...    29   2.0  
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres...    29   2.0  
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical ...    28   4.7  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    28   6.2  

>Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical
           protein F35E12.7a protein.
          Length = 739

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/77 (25%), Positives = 30/77 (38%)
 Frame = +3

Query: 237 KYDSTINSDQIYFDDNRPSGSINIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVI 416
           K  ++IN         RP  S    ++L+  +     T IPI   N      +  +    
Sbjct: 536 KTTTSINVSSSTTKSTRPMQSTTTYQKLAQASSTASTTPIPITTQNISTASIATPSTKTP 595

Query: 417 IQPSIQTYNQETTKIVP 467
           I PS+ T    TTK+ P
Sbjct: 596 ITPSLITTRSSTTKLSP 612


>AL033510-3|CAA22066.1|  323|Caenorhabditis elegans Hypothetical
           protein Y40H7A.5 protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 620 HHVTWLTACYLLKYIYSKMCYSIIDTIDLGSCYLRLKKRICHLFSW 483
           H++ WL ACYL +Y    +C   I +I + + +L       H+  W
Sbjct: 100 HNLIWLIACYLFRYYILYVCDPSIKSI-IFAAFLVYTPSFVHMAMW 144


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 161 KHFHDEIYTCFIHTGVFFSFASSNFT 84
           K+ +D+I+ CFI + VFF+F  S  T
Sbjct: 149 KYLNDDIFECFIISFVFFNFVISVLT 174


>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
            protein F11A10.1b protein.
          Length = 1289

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = +3

Query: 318  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 482
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 811  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 870

Query: 483  PAKKMTDTFFQTQVTRPEIDSVD 551
            P K    T ++  +  P+ DS D
Sbjct: 871  PPKVFDPTVYEMPL--PDDDSPD 891


>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical protein
            F11A10.1a protein.
          Length = 1291

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = +3

Query: 318  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 482
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 813  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872

Query: 483  PAKKMTDTFFQTQVTRPEIDSVD 551
            P K    T ++  +  P+ DS D
Sbjct: 873  PPKVFDPTVYEMPL--PDDDSPD 893


>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical protein
            F11A10.1b protein.
          Length = 1289

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = +3

Query: 318  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 482
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 811  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 870

Query: 483  PAKKMTDTFFQTQVTRPEIDSVD 551
            P K    T ++  +  P+ DS D
Sbjct: 871  PPKVFDPTVYEMPL--PDDDSPD 891


>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical protein
            F11A10.1a protein.
          Length = 1291

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = +3

Query: 318  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 482
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 813  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872

Query: 483  PAKKMTDTFFQTQVTRPEIDSVD 551
            P K    T ++  +  P+ DS D
Sbjct: 873  PPKVFDPTVYEMPL--PDDDSPD 893


>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expression
            abnormal protein protein.
          Length = 1291

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = +3

Query: 318  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 482
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 813  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872

Query: 483  PAKKMTDTFFQTQVTRPEIDSVD 551
            P K    T ++  +  P+ DS D
Sbjct: 873  PPKVFDPTVYEMPL--PDDDSPD 893


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
           protein B0412.3 protein.
          Length = 1107

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 378 GAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSG--TPAKKMTDTFFQTQVT 527
           G P  SP+ N+ I Q  + TY  +   ++ +       A K+ + F +T+V+
Sbjct: 552 GKPPGSPFPNDDISQEQLHTYQLQWQHVLQEHPAFVVQASKIAELFLETRVS 603


>AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical
           protein Y62H9A.4 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +3

Query: 156 VFISLTVCCFVLSADSQSSFRTQNQYPKYDST---INSDQIYFDDNRPSGSINIQKELSN 326
           +F+S+  C  V+SA+  + + T + YP + S      SD     +N      N  +    
Sbjct: 4   LFLSVIACAVVVSANQYNDYGTISHYPGHHSNNRYSTSDSSDSSENELKSRSNSDERYPE 63

Query: 327 LNGLTIGTKIPIINPNFGAPQYSPYANNVIIQ 422
             G+    + P  N      +Y P  NNV  Q
Sbjct: 64  YPGV-YAPQPPATNYGTNGNEYRP-PNNVYEQ 93


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 216 RTQNQYPKYDSTINSDQIYFDDNRPSGS 299
           R QN++  Y ST+N D ++ +++   GS
Sbjct: 235 RNQNRFSSYGSTLNGDLLFGENDDEEGS 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,811
Number of Sequences: 27780
Number of extensions: 279424
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)