Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5l05
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     29   0.037
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.2  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
 Frame = +3

Query: 381 APQYSPYANNVIIQPSIQTYNQ-------ETTKIVPQKSGTPAK 491
           +PQY   +++++ QPSI+TY Q       +T +I PQ+  T +K
Sbjct: 439 SPQYPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSK 482


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/57 (19%), Positives = 24/57 (42%)
 Frame = -2

Query: 620 HHVTWLTACYLLKYIYSKMCYSIIDTIDLGSCYLRLKKRICHLFSWCAGLLRNDFGG 450
           HH  WL   ++L  +   + ++ ++   +      + + I  +       LR +FGG
Sbjct: 2   HHRMWLQQIFILLQMIHLIAWASLENTGISDRLENVTQTISRILDGYDIRLRPNFGG 58


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 47  QKSYKNENSYRKYRKT 62


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 47  QKSYKNENSYRKYRKT 62


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 47  QKSYKNENSYRKYRKT 62


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 47  QKSYKNENSYRKYRKT 62


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 47  QKSYKNENSYRKYRKT 62


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 47  QKSYKNENSYRKYRKT 62


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 47  QKSYKNENSYRKYRET 62


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 47  QKSYKNENSYRKYRET 62


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 280 QKSYKNENSYRKYRET 295


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 280 QKSYKNENSYRKYRET 295


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 285 QKSYKNENSYRKYRET 300


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 204 QSSFRTQNQYPKYDST 251
           Q S++ +N Y KY  T
Sbjct: 280 QKSYKNENSYRKYRET 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,633
Number of Sequences: 438
Number of extensions: 3847
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)