Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5l04
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.14 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.75 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +3

Query: 36  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 215
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 216 KGSIIQNVVNNLIIDKRRNTMEYCYKL 296
              +  N+    I      TMEY  +L
Sbjct: 58  PAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +3

Query: 36  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 215
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 216 KGSIIQNVVNNLIIDKRRNTMEYCYKL 296
              +  N+    I       MEY  +L
Sbjct: 58  PAIVRVNLFVRSIATISDIKMEYSVQL 84


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 112 ADSSTTPALAASMHIANTTRSFILLGAFQM 23
           A+   +  +A  +HI+N T SF L G F++
Sbjct: 396 ANKMESSGMAGRVHISNATLSF-LNGEFEV 424


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 170 VAGEDAVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYNEKFHFVRSISDGLQVC 9
           + GE   V FL  ++V        DA+   +     YN+    V + SD L+VC
Sbjct: 4   IIGETLRVWFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 170 VAGEDAVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYNEKFHFVRSISDGLQVC 9
           + GE   V FL  ++V        DA+   +     YN+    V + SD L+VC
Sbjct: 4   IIGETLRVWFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 598 RLLQLQVVVLIFKYWLYLVLWIL 530
           +L + QV++ I   W Y + W L
Sbjct: 156 KLSRGQVILFIVLIWTYTIPWAL 178


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 456  DGVDKHTELVSWK 494
            D +D+HT  V+WK
Sbjct: 986  DDLDQHTLKVTWK 998


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 283 YSMVFRLLSMIRLLTTFWMMEPLPWL 206
           Y+M F         T F  ++P PW+
Sbjct: 213 YNMTFAQNGPFNTTTIFVPVKPCPWI 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,710
Number of Sequences: 438
Number of extensions: 3562
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)