Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5k23
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    31   0.12 
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    27   1.9  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.4  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    26   5.9  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   7.9  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   7.9  

>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = +1

Query: 169 SLGLACKDAEETLYEVLNKWKDEGIKMWNVDQG----KYFLYSEFL--ADIMAPLVGADP 330
           SLGL C   EE L E+L      G K+  V  G         S +L   D M  +V  DP
Sbjct: 28  SLGLRCPKTEEQLREILVDANSNGKKIRVVGAGHSPSDIVCTSGYLLSLDKMNKVVSFDP 87

Query: 331 DEISITGCTTINIHQ 375
           D +SIT    I  +Q
Sbjct: 88  DSLSITVQAGIRFYQ 102


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 40  KFNNMYEYQDGPEFPKFLDNNDQLGHFRQRFYIKQGTIYMCGNSLGLACKDAEETLYEVL 219
           KF ++  Y D PE P F +   +    R R      +  M G    L    A+ T+++ L
Sbjct: 37  KFTSIRTYTDSPEMPDFSEYQTKSTGDRSRVI----SYAMVGTMGALTAAGAQATVHDFL 92

Query: 220 NKW 228
             W
Sbjct: 93  ASW 95


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 217 LNKWKDEGIKMWNVDQGKYFLYSEFLADIMAPLVG 321
           LN  K  G   ++V    +F+YS+  + I+  LVG
Sbjct: 342 LNNMKSSGTVYFSVFNSLFFMYSKLTSKILNTLVG 376


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +1

Query: 43  FNNMYEYQDGPEFPKFLDNNDQLG--HFRQRFYIKQGTIYMCGNSLGLACKDAEETLYEV 216
           + N +  +D   F + +++  +L     ++RF +          ++G +  DA   +  +
Sbjct: 120 YQNKFTSEDNASFGELMEDESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNSDA---IKSI 176

Query: 217 LNKWKDEGIKMWNVDQGKYFLYS 285
             K KD+ IK WN       +Y+
Sbjct: 177 AWKEKDKSIKTWNYQPKNALMYT 199


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 217 LNKWKDEGIKMWNVDQGKYFLYSEFLADIMAPLVGAD 327
           +++W    I  W +D   +F Y E +   +A   G D
Sbjct: 45  ISEWYKSSISEWTLDYPPFFAYMECVLSWIAYFFGFD 81


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 337 ISITGCTTINIHQ-TISTFYKPTAEKYKILVDDINFPT 447
           ISI+ C+++N+H  T   F  PT +   I + DIN  T
Sbjct: 156 ISISNCSSVNLHNATKCNFTFPTIQG-SIHLSDINDST 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,582
Number of Sequences: 5004
Number of extensions: 59294
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)