Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5k17
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 144 6e-36
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 70 3e-13
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 31 0.16
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 30 0.22
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.22
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 29 0.66
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 27 2.0
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 26 3.5
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 4.7
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 6.2
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 6.2
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 25 6.2
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 25 8.1
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 144 bits (350), Expect = 6e-36
Identities = 63/164 (38%), Positives = 98/164 (59%)
Frame = +2
Query: 92 EWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPAN 271
E+ +TP+P+DDG NP+ I ++ +E YFRA++ E S R L+LT + NPA+
Sbjct: 16 EYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEYSLRALNLTGFLIMNNPAH 75
Query: 272 YTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTG 451
YTVW YR +L H + + EL++++ + ++ KNYQVWHHR+ ++ ++ ELE T
Sbjct: 76 YTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHRQKILSLTKNYERELEFTK 135
Query: 452 DALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNN 583
D KNYH W +R W ++ F Y +EL + L+ D+ NN
Sbjct: 136 KMFEIDSKNYHVWSYRVWILQNFNDYSQELKLTNELLEKDIYNN 179
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/81 (33%), Positives = 46/81 (56%)
Frame = +2
Query: 269 NYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELT 448
NY VW +R+ +L L + EL++ + + + KNY VW +R +++ D + EL+LT
Sbjct: 110 NYQVWHHRQKILS-LTKNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFNDYSQELKLT 168
Query: 449 GDALLQDPKNYHAWQHRQWAI 511
+ L +D N AW HR + +
Sbjct: 169 NELLEKDIYNNSAWNHRFYVL 189
Score = 34.7 bits (76), Expect = 0.010
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 176 VYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLL----KHLNTDLRTELDY 343
V+ Y +LQ+ + L LT + LE + N + W +R +L K ++ L EL+Y
Sbjct: 147 VWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNY 206
Query: 344 VEAVIKNSPKNYQVWHH 394
++ I +P N W++
Sbjct: 207 LKDKILFAPDNQSAWNY 223
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 69.7 bits (163), Expect = 3e-13
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Frame = +2
Query: 152 AHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKH------- 310
A E++ + F+ + + SE L LT + L+ NP Y+VW YRR++L +
Sbjct: 23 AKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNPETYSVWNYRREILLNDVFPKIS 82
Query: 311 LNTD---LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDP--TMELELTGDALLQDPK 475
LN L EL YV + +K PK Y +++HRR +E P E+ +T L D +
Sbjct: 83 LNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCLENAPYPNWNYEMMITEKLLSADAR 142
Query: 476 NYHAWQHRQWAIKTF------GLYEKELDFVDNLITDDVRN 580
N+H W +R++ + L +KE+++ + I + N
Sbjct: 143 NFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSN 183
Score = 35.9 bits (79), Expect = 0.004
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Frame = +2
Query: 236 LTKDALELNPANYTVWQYRRDLLKHL----NTDL-RTELDYVEAVIKNSPKNYQVWHHRR 400
+T+ L + N+ W YRR ++ + N L + E++Y + I + N+ H+R
Sbjct: 132 ITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFSALHNRT 191
Query: 401 VLVEWL----QDPT-----------MELELTGDALLQDPKNYHAWQHRQW 505
L+E + DP EL++ A+ DP + W + +W
Sbjct: 192 KLIETILNLEADPNSQKALAKQILEQELDMIHQAVFTDPDDSSVWIYHRW 241
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 221 ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTEL 337
E+ L + A+ +P + +VW Y R L+ H N + T L
Sbjct: 216 EQELDMIHQAVFTDPDDSSVWIYHRWLMGHCNPNSMTPL 254
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.16
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +2
Query: 368 PKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 547
PK+ WH ++ +D L+ +AL P N W + GLY+ D
Sbjct: 73 PKSQFCWHALAIVYRETKDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDN 132
Query: 548 VDNLITDDVRN 580
+ L+ D N
Sbjct: 133 WNRLLQLDSSN 143
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 30.3 bits (65), Expect = 0.22
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 206 SNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHL---NTDLRTELDYVEAVIKNSPKN 376
S + S+ ++ D L L+P Y DLL L + + E+ +E +I PKN
Sbjct: 676 SAQMSDSIISSLSDVLVLSPLEVLASWYAADLLDALLMESLSRKVEISEIEEIISLCPKN 735
Query: 377 YQVWHH 394
+ H
Sbjct: 736 SSIIRH 741
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.22
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +2
Query: 182 DYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIK 361
D+FR+++Q NEK + T ++ +LN Y+R L++ L EL+ ++++ +
Sbjct: 631 DFFRSLVQENEKLLDMAPATPNS-KLNTNLIEQTSYQRSLIR--LEQLTNELESLKSISR 687
Query: 362 NSPKNYQ 382
N K ++
Sbjct: 688 NKEKKFE 694
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 28.7 bits (61), Expect = 0.66
Identities = 21/124 (16%), Positives = 44/124 (35%)
Frame = +2
Query: 179 YDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVI 358
Y ++ + + ++ K A++L NY W L + Y+++++
Sbjct: 899 YRFYECDTTKDATLQVAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLL 958
Query: 359 KNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKE 538
N ++ VW + L D ++ DP N AW + + G K
Sbjct: 959 LNE-RSSGVWANYGALCIQNHDVECANAAFTRSISIDPDNSQAWLGKAYCSIAVGSIRKA 1017
Query: 539 LDFV 550
+ +
Sbjct: 1018 VQII 1021
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 125 DGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTK 244
+G +P +IAH E+ E++ YF ++ EK R+L L K
Sbjct: 205 EGLSPAELIAHKEESEEMGGYF--IVNGIEKLIRMLILPK 242
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 458 LLQDPKNYHAWQHRQWAI-KTFGLYEKELD 544
LLQ+ K Y W+ R A+ K FG E +LD
Sbjct: 119 LLQEAKTYEEWKERARALDKYFGNDEWKLD 148
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 57 VMFYGYHTKKGRSGVMLRLFQRMTVPTQW 143
++++G T GRS ++L + + V T+W
Sbjct: 639 ILYFGVQTHVGRSELLLDVVRTSKVATRW 667
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 80 KERPEWSDVTPVPEDDGPNPVVVIAHSEKF 169
+ R EW + PV D V+I+H+ KF
Sbjct: 200 RSRTEWPEGIPVKGHDTYEDKVIISHNWKF 229
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 331 CPQVSVQMFQQISPVLPNSVVSWI 260
CP+ +++P PN+ +SWI
Sbjct: 347 CPRAGHSHTYELAPASPNTSISWI 370
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 209 NEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNT 319
N++ HL A E + ++R D L+HLNT
Sbjct: 146 NDQLRETAHLENKAPEFKEIRSHLAEFRDDELEHLNT 182
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 526 KPKCFDSPLPMLPSMIVLWIL 464
KP+ FD+ P LP +I L +L
Sbjct: 91 KPRSFDNDTPPLPLLIALIVL 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,970
Number of Sequences: 5004
Number of extensions: 59119
Number of successful extensions: 202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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