Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5k17
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0722 + 19729331-19729582,19730535-19730644,19730810-197309... 198 3e-51
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 67 8e-12
01_06_0285 + 28183108-28183209,28183495-28183754,28183950-281842... 48 6e-06
01_06_0287 + 28224956-28225216,28225385-28225641,28225789-282258... 33 0.22
11_06_0510 + 24420402-24422582 32 0.29
07_01_0808 - 6326767-6327788,6328270-6328459 31 0.68
11_06_0514 - 24477720-24479915 31 0.89
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 31 0.89
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 30 1.2
03_05_0078 + 20555296-20555560,20555643-20555887,20555947-205561... 30 1.6
06_03_1451 + 30252366-30252373,30252621-30252867,30253441-302538... 29 2.1
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 29 2.7
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973... 29 2.7
08_01_0273 - 2203828-2204124,2204812-2205072,2205161-2205296,220... 29 3.6
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 29 3.6
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 29 3.6
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561... 29 3.6
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 29 3.6
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 28 4.8
10_08_0277 - 16437023-16437304,16437687-16437833,16440169-164403... 28 4.8
07_03_1625 - 28219006-28219041,28219150-28219227,28219318-282193... 28 4.8
01_06_1392 + 36995579-36996028,36997145-36997375 28 6.3
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 27 8.3
>09_04_0722 +
19729331-19729582,19730535-19730644,19730810-19730930,
19731080-19731175,19731429-19731838,19732251-19732309,
19733235-19733287,19733432-19733485
Length = 384
Score = 198 bits (483), Expect = 3e-51
Identities = 91/185 (49%), Positives = 124/185 (67%), Gaps = 2/185 (1%)
Frame = +2
Query: 35 SMSDCGDSDVLWIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNE 214
S S G SD W+P RPE +DV PV +DDGP+PVV IA+ ++F +V DYFRA+ + E
Sbjct: 5 STSSEGASDE-WLPPSRRPELADVVPVTQDDGPHPVVAIAYRDEFREVMDYFRALYFAGE 63
Query: 215 KSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQVWHH 394
+S R LHLT + ++LNP NYTVW +RR +L+ L+ DLR E+D+V+ + + +PKNYQ+WHH
Sbjct: 64 RSVRALHLTAEVIDLNPGNYTVWHFRRLVLEALDADLREEMDFVDRIAECNPKNYQIWHH 123
Query: 395 RRVLVEWL--QDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITD 568
+R L E L E E T L D KNYHAW HRQW ++ G +E EL + + L+ +
Sbjct: 124 KRWLAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALGGWETELQYCNQLLEE 183
Query: 569 DVRNN 583
DV NN
Sbjct: 184 DVFNN 188
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +2
Query: 176 VYDYFRAVLQSNEKSERV-LHLTKDALELNPANYTVWQYRRDLLKHLNTDLRT-ELDYVE 349
V+ + R VL++ + R + E NP NY +W ++R L + L D+ E ++
Sbjct: 85 VWHFRRLVLEALDADLREEMDFVDRIAECNPKNYQIWHHKRWLAEKLGPDIANKEHEFTR 144
Query: 350 AVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAI 511
++ KNY W HR+ +++ L EL+ L +D N AW R I
Sbjct: 145 KILSMDAKNYHAWSHRQWVLQALGGWETELQYCNQLLEEDVFNNSAWNQRYLVI 198
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Frame = +2
Query: 239 TKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQVWHHRRVLVEWL 418
T+ L ++ NY W +R+ +L+ L TEL Y +++ N W+ R +++
Sbjct: 143 TRKILSMDAKNYHAWSHRQWVLQALG-GWETELQYCNQLLEEDVFNNSAWNQRYLVIT-- 199
Query: 419 QDPTM---------ELELTGDALLQDPKNYHAWQHRQWAIKTFGLY--EKELDFVDNLIT 565
P + E++ T A+L +P+N W++ + GLY E L D I+
Sbjct: 200 SSPLLGGLAAMRDSEVDYTVGAILANPQNESPWRYLK------GLYKGENNLLMADERIS 253
Query: 566 D 568
D
Sbjct: 254 D 254
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 67.3 bits (157), Expect = 8e-12
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 14/139 (10%)
Frame = +2
Query: 206 SNEKSERVLHLTKDALELNPANYTVWQYRRDLLKH----------LNTDLRTELDYVEAV 355
S ++ L L+ LE+NP YT W YR+ +H + + + EL VE
Sbjct: 37 SRTYTKEALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIKSAIDDELRVVEVA 96
Query: 356 IKNSPKNYQVWHHRRVLVEWLQDPT---MELELTGDALLQDPKNYHAWQHRQWAIKTFGL 526
++ +PK+Y W+HR+ L+ P E L L D +N+H W +R++ + G+
Sbjct: 97 LRQNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHGWNYRRFLARFMGV 156
Query: 527 -YEKELDFVDNLITDDVRN 580
E+EL + + I+D+ N
Sbjct: 157 PEEEELKYTMDKISDNFSN 175
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Frame = +2
Query: 251 LELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQVWHHRRVLVEWL---Q 421
L+++ N+ W YRR L + + EL Y I ++ NY WH+R +L+ L Q
Sbjct: 134 LKVDARNFHGWNYRRFLARFMGVPEEEELKYTMDKISDNFSNYSAWHNRSILLSNLLIKQ 193
Query: 422 DP---------TMELELTGDALLQDPKNYHAWQHRQWAI 511
+ E EL AL DP + W + W +
Sbjct: 194 SKGFESKQKIFSEEFELVTQALFTDPSDQSGWFYHLWLL 232
>01_06_0285 +
28183108-28183209,28183495-28183754,28183950-28184237,
28184385-28184495,28184815-28184905,28185146-28185214,
28185627-28185716,28185887-28185937,28186040-28186258,
28186371-28186490
Length = 466
Score = 48.0 bits (109), Expect = 6e-06
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Frame = +2
Query: 239 TKDALELNPANYTVWQYRRDLLK--HLNTDLRTELDYVEAVIKNSPKNYQVWHHRRVLV- 409
+K L L P T W R+ +L + T L+ EL ++ SPKN W HRR ++
Sbjct: 200 SKALLILCPDMLTAWNSRKIVLSVNYDFTKLKDELQLCALILSYSPKNESTWSHRRWVIK 259
Query: 410 ---EWLQDPT----MELELTGDALLQDPKNYHAWQHRQWAI 511
E QD + ME L + NY AW+HR W I
Sbjct: 260 KVSEHNQDVSELIEMESVLVKQIAEKSKMNYRAWRHRCWLI 300
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 311 LNTDLRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTM---ELELTGDALLQDPKNY 481
+ TDL + + +A++ P W+ R++++ D T EL+L L PKN
Sbjct: 192 METDL---MRHSKALLILCPDMLTAWNSRKIVLSVNYDFTKLKDELQLCALILSYSPKNE 248
Query: 482 HAWQHRQWAIKTFGLYEKEL 541
W HR+W IK + +++
Sbjct: 249 STWSHRRWVIKKVSEHNQDV 268
Score = 34.7 bits (76), Expect = 0.055
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Frame = +2
Query: 230 LHLTKDALELNPANYTVWQYRRDLLKHL---NTDLRTELDYVEAVI-----KNSPKNYQV 385
L L L +P N + W +RR ++K + N D+ +EL +E+V+ + S NY+
Sbjct: 234 LQLCALILSYSPKNESTWSHRRWVIKKVSEHNQDV-SELIEMESVLVKQIAEKSKMNYRA 292
Query: 386 WHHRRVLVEWL-QDPTMELELTGDALLQDPKN 478
W HR L+ ++ ++ ++ L L ++D ++
Sbjct: 293 WRHRCWLIPYMTREQSLLLALLDSCHVEDTED 324
>01_06_0287 +
28224956-28225216,28225385-28225641,28225789-28225899,
28225926-28226021,28226078-28226134,28226348-28226438,
28226610-28226678,28227091-28227180,28227390-28227440,
28227535-28227753,28228064-28228127,28228211-28228299
Length = 484
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 239 TKDALELNPANYTVWQYRRDLLK--HLNTDLRTELDYVEAVIKNSPKNYQVWHHR 397
+K L L P T W R+ +L + T L+ EL ++ SPKN W HR
Sbjct: 156 SKALLILCPDMLTAWNSRKMVLSVNYDFTKLKDELQLCALILSCSPKNESTWSHR 210
>11_06_0510 + 24420402-24422582
Length = 726
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = +2
Query: 434 ELELTGDALLQDPKNYH-AWQHR-QWAIKTFGLYEK 535
+L+ ++ +DPK+Y A +HR QWA++ GLY+K
Sbjct: 448 QLKSKASSISKDPKSYRKAGEHRGQWALQRKGLYQK 483
>07_01_0808 - 6326767-6327788,6328270-6328459
Length = 403
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 113 VPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPA 268
V + D P+ + +SE ++ + F+ + +S++ +R HLT++ L+ NP+
Sbjct: 35 VYQTDYPDYYFRVTNSEHLTNLKERFQRMCESSQIRKRYTHLTEEILQENPS 86
>11_06_0514 - 24477720-24479915
Length = 731
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 434 ELELTGDALLQDPKNYH-AWQHR-QWAIKTFGLYEK 535
+L+ ++ +DPK+Y +HR QWA++ GLY+K
Sbjct: 448 QLKSKASSISKDPKSYRKVGEHRGQWALQRKGLYQK 483
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 30.7 bits (66), Expect = 0.89
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Frame = +2
Query: 200 LQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNY 379
LQ +E + +L KD LE A + + D + L T+L+ EL+ VEA K K
Sbjct: 838 LQMDESRSLITNL-KDELEQVEAQKVELKLQMDESRSLITNLKDELEQVEAQ-KVELKEN 895
Query: 380 QVWHHRRVL-----VEWLQDPTMELELTGDALLQDPKN 478
Q+ HRR+ E L+ +L+ T D ++++ K+
Sbjct: 896 QLESHRRLSEVQEDSEALRRSNAKLQATVDHVVEECKS 933
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 320 DLRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDAL-LQDPKNYHAWQH 496
D R EL +++ +P N + WH R L E +DPT ++ +A+ DP H
Sbjct: 378 DRRPEL-LSSVLLRQNPHNVEEWHRRVKLFE--KDPTRQVATYVEAVKTVDPMKAAGKPH 434
Query: 497 RQWAIKTFGLYEK 535
W + +YEK
Sbjct: 435 TLW-VAFAKMYEK 446
>03_05_0078 +
20555296-20555560,20555643-20555887,20555947-20556180,
20556451-20556537,20556624-20556959,20557057-20557194,
20557231-20557311,20557392-20557480,20557750-20557813,
20557896-20557985,20558064-20558186
Length = 583
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 233 HLTKDALELNPANYTVWQYRRDLLK--HLNTDLRTELDYVEAVIKNSPKNYQVWHHRRVL 406
HLT+D + + W+ + LK + N D+RT D ++KN PK + R ++
Sbjct: 186 HLTRDWILMKVDKG--WRSYKSRLKGRYFNPDVRTLND----ILKNVPKGVNGYQWRGLV 239
Query: 407 VEWLQDPTMELELTG 451
W QD E ++ G
Sbjct: 240 KIWYQDKHKEAKVKG 254
>06_03_1451 +
30252366-30252373,30252621-30252867,30253441-30253893,
30253971-30254555
Length = 430
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 110 PVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTK 244
P P GPNP+ ++ ++ + YD + + + EK ERVL L K
Sbjct: 76 PPPPPPGPNPIDILKRLQR-QAFYDIMQ-LREKQEKIERVLTLFK 118
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 29 SLSMSDCGDSDVLWIPYKER-PEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQ 205
SL + DS +P++ R P+ D T P D P V + FE+ D ++L+
Sbjct: 1461 SLRKQEAADSHSTTVPFQRRYPDIEDTTKEPRDK-PKEKVSEEAQDGFEETKDLDSSILR 1519
Query: 206 SNEKSE 223
+S+
Sbjct: 1520 GRAQSQ 1525
>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
9739708-9739831,9739927-9740635,9741826-9742132,
9742213-9743704
Length = 1108
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 424 ILQPFYQNPTVVPYLIILW*ILYNRFNII*FCPQVSVQMFQQISPVLPNSVV 269
IL FY+N T V L++ W +LY F + + S ++ + LP VV
Sbjct: 935 ILYNFYKNATFV--LVLFWYVLYTAFTLTTAITEWSSLLYTVLYTSLPTIVV 984
>08_01_0273 -
2203828-2204124,2204812-2205072,2205161-2205296,
2205438-2205656,2206130-2206323,2206339-2206505,
2206862-2207132,2207740-2207784
Length = 529
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Frame = +2
Query: 167 FEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDL--LKHLNTDLRTE-- 334
F+D+YD + + +S +E + ++A E P Y + Y++ L +K + TDL+ +
Sbjct: 277 FDDIYDNYSTLEESKLFTEAIERWDEEAAEELP-GYMKFFYKKVLTTMKSIETDLKLQGN 335
Query: 335 --LDYVEAVI 358
+DYV+ ++
Sbjct: 336 KHVDYVKNLL 345
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 65 LWIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYD 184
+++ ++ E S P PE P+ V + + EK E VYD
Sbjct: 438 VYLMLPDQSERSPPPPPPESGSPDLAVAMRYLEKVEQVYD 477
>04_03_0535 -
16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 95 WSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANY 274
WS +TPV P+ +I ++ +D + L + + R + + K A +++ N
Sbjct: 28 WSSITPVSPATTWGPLAIIFIVSASKEAWDDYNRYLSDKKANGREVLVIK-AQDIHVGN- 85
Query: 275 TVWQYRRD 298
VW Y+ D
Sbjct: 86 IVWLYQND 93
>03_02_0099 -
5614007-5614233,5614725-5614998,5615086-5616179,
5616674-5616772,5617371-5617389
Length = 570
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -2
Query: 398 YGGAIPDNSLVNSL*PLQHNLILSSSQCSNVSAN-LSCIAKQCS*LDLIPKHPW 240
Y +P + + N I S + AN SC+A C LD I K PW
Sbjct: 244 YDNLLPVKGSGEEIEKISSNNISYESHYEKLKANGASCLAISCELLDAIAKIPW 297
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 119 EDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRD 298
+D GP PV+ +AH + V+ FR ++ + L PA + RR
Sbjct: 57 DDRGPRPVLPLAHGD--PSVFPEFRTAAEAEDAVADALR--SGDFNCYPAGVGLPAARRA 112
Query: 299 LLKHLNTDLRTEL 337
+ HL+ DL +L
Sbjct: 113 VADHLSRDLPYKL 125
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Frame = +2
Query: 59 DVLWIPYKERPEWS--------DVTPVPEDDGPNPVV 145
D LW PY + P W+ DVT + D P+P++
Sbjct: 251 DRLWQPYGDDPSWTNITVAAAVDVTNISRSDDPSPIL 287
>10_08_0277 -
16437023-16437304,16437687-16437833,16440169-16440342,
16441192-16441266,16441653-16441805,16442488-16442751
Length = 364
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +2
Query: 176 VYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAV 355
VY+ + + K ++ + + A+EL P T W D + DL++ L E V
Sbjct: 272 VYNALGVSYKRDNKLDKSIQQFEKAVELQPGYVTAWNNLGDAYEQ-KKDLKSALKAFEEV 330
Query: 356 IKNSPKN 376
+ P N
Sbjct: 331 LLFDPNN 337
>07_03_1625 -
28219006-28219041,28219150-28219227,28219318-28219389,
28219468-28219567,28219632-28219708,28219802-28219872,
28219987-28220066,28220143-28220194,28220376-28220431,
28220506-28220551,28220631-28220682,28220787-28220888,
28220967-28221021,28221101-28221180,28221271-28221321,
28221354-28221377,28221742-28221833,28221928-28222057,
28222156-28222230,28222433-28222543,28222637-28222693
Length = 498
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 257 LNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIK 361
L NY W R LNTD++ ELD++ + ++
Sbjct: 230 LGGENYVFWGGREGYQTLLNTDMKRELDHLASFLQ 264
>01_06_1392 + 36995579-36996028,36997145-36997375
Length = 226
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 494 VAKHDS-SLDLVEVHRLSIQVPLWDLAAILPKPYGGAIPDNSLVNSL 357
+ HD+ S+ L + RL I VP+W LA I P +G P NS V +L
Sbjct: 83 IGMHDTKSICLRALARLPIVVPIWFLAIIFPF-FG---PINSAVGAL 125
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 457 CIACQFKFHCGILQPFYQNPTVVPYL 380
C C +HC QP ++N T PYL
Sbjct: 208 CKRCDGAYHCYCQQPSHKNVTHGPYL 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,381,610
Number of Sequences: 37544
Number of extensions: 360769
Number of successful extensions: 908
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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