Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5k10
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 104 7e-23
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 97 1e-20
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 95 5e-20
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 85 4e-17
11_01_0557 + 4394754-4396040 84 1e-16
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 64 7e-11
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 62 5e-10
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 33 0.21
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841... 30 1.5
01_06_0414 + 29182350-29183812,29184211-29184346 30 1.9
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 29 3.4
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 29 3.4
08_01_0568 - 5052608-5052937 29 4.5
08_02_0214 + 14355436-14355473,14355584-14355596,14355695-143558... 28 5.9
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 28 7.8
08_02_0720 + 20394898-20395284,20396062-20396202,20396304-203966... 28 7.8
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007... 28 7.8
04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871 28 7.8
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 104 bits (249), Expect = 7e-23
Identities = 56/157 (35%), Positives = 91/157 (57%)
Frame = +3
Query: 174 MLFLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVLQIPGGEL 353
+ F + +L RVN+S+AI+ M+ + F WS T +I SSFFWGY++ QI GG
Sbjct: 187 LCFFSFLLCNMDRVNMSIAILPMSSE-----FGWSPATVGLIQSSFFWGYLLTQILGGIW 241
Query: 354 AAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQGFTYPSIHNLIGK 533
A +FGGK+++ + S+ ++L PLAA G + R G+ +G P+++N++ K
Sbjct: 242 ADRFGGKVVLGFGVVWWSIATVLTPLAAKI-GLPFLLVMRAFMGIGEGVAMPAMNNILSK 300
Query: 534 WVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWG 644
WVP+ E+SR ++Y+G LG+ L S + +G
Sbjct: 301 WVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFG 337
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 97.1 bits (231), Expect = 1e-20
Identities = 55/157 (35%), Positives = 87/157 (55%)
Frame = +3
Query: 174 MLFLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVLQIPGGEL 353
+ F A +L RVN+S+AI+ M+ + F W+ QT +I SSFFWGY++ QI GG
Sbjct: 125 LCFSAFLLCNMDRVNMSIAILPMSAE-----FGWNPQTVGLIQSSFFWGYLLTQIAGGIW 179
Query: 354 AAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQGFTYPSIHNLIGK 533
A GGK ++ + S+ + L P AA G + R G+ +G P+++N++ K
Sbjct: 180 ADTVGGKTVLGFGVIWWSIATALTPFAAKL-GLPFLLVTRAFMGVGEGVAMPAMNNILSK 238
Query: 534 WVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWG 644
WVP+ E+SR ++Y+G LG+ L S + +G
Sbjct: 239 WVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFG 275
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 95.1 bits (226), Expect = 5e-20
Identities = 57/161 (35%), Positives = 87/161 (54%)
Frame = +3
Query: 171 AMLFLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVLQIPGGE 350
AML LA+ L RV +S+AIV ++ ++ W+ V+ SSF WGY+V I GG
Sbjct: 102 AMLGLALALCNADRVVMSVAIVPLSQ-----AYGWTPSFAGVVQSSFLWGYLVSPIIGGA 156
Query: 351 LAAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQGFTYPSIHNLIG 530
L +GGK ++ + + S+ + L P AA W + RVL G+++G PS++N++
Sbjct: 157 LVDYYGGKRVMAYGVALWSLATFLSPWAAARSLW-LFLSTRVLLGMAEGVALPSMNNMVL 215
Query: 531 KWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWGLAG 653
+W P E+S I AG QLG + L+ S I G+ G
Sbjct: 216 RWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFG 256
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 85.4 bits (202), Expect = 4e-17
Identities = 50/161 (31%), Positives = 82/161 (50%)
Frame = +3
Query: 171 AMLFLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVLQIPGGE 350
A++ M+L RV +S+A+V + + WS ++ SSF WGYV + GG
Sbjct: 127 ALVAAVMLLCNADRVVMSVAVVPFAAQ-----YGWSSSFLGIVQSSFLWGYVFSSMVGGA 181
Query: 351 LAAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQGFTYPSIHNLIG 530
LA ++GGK ++ + + S+ + L P AA + A R L GL++G +P++ +
Sbjct: 182 LADRYGGKKVMAGAAALWSLATFLTPWAASQSTIM-LLAIRALFGLAEGVAFPTMSTFLP 240
Query: 531 KWVPLEEKSRLGTIIYAGGQLGTALQLMASGFIAQYWGLAG 653
KW P E++ I G LG + +A+ I + GLAG
Sbjct: 241 KWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAG 281
>11_01_0557 + 4394754-4396040
Length = 428
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/153 (31%), Positives = 83/153 (54%)
Frame = +3
Query: 156 RHLQTAMLFLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVLQ 335
R+ + F+ + Y RV S+A D + N M ILS F++GYV+ Q
Sbjct: 6 RYAIVLLTFMCTNVCYIERVGFSIAYTVAADAVGTNQANKGM-----ILSMFYYGYVLSQ 60
Query: 336 IPGGELAAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQGFTYPSI 515
IPGG A + GG++++++S + S + ++PL + R+L G++QG +PSI
Sbjct: 61 IPGGWAAQRLGGRLVLLLSFVLWSSICAVVPLDP--NRVILLVLSRLLVGVAQGLIFPSI 118
Query: 516 HNLIGKWVPLEEKSRLGTIIYAGGQLGTALQLM 614
H ++ +WVP +E+SR ++ +G LG A ++
Sbjct: 119 HTVLAQWVPPQERSRSVSLTTSGMYLGAACGML 151
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 64.5 bits (150), Expect = 7e-11
Identities = 42/138 (30%), Positives = 72/138 (52%)
Frame = +3
Query: 183 LAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVLQIPGGELAAK 362
LA V+ +VN+S+AI+ M+ + + W+ T ++ SSFFWGY + Q+PGG LA
Sbjct: 140 LAFVICNMDKVNLSVAIIPMSHQ-----YGWNSSTAGLVQSSFFWGYALSQLPGGWLAKL 194
Query: 363 FGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQGFTYPSIHNLIGKWVP 542
FGG+ ++ I + S+ + +IP A G R + + G ++ S+ L+ P
Sbjct: 195 FGGRRVLEIGVVAWSLATAIIPAVA--GSIPVQERSRAVAVVFGGLSFGSVLGLLFA-PP 251
Query: 543 LEEKSRLGTIIYAGGQLG 596
+ + ++ Y G LG
Sbjct: 252 IIQNLGWESVFYIFGLLG 269
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/95 (33%), Positives = 57/95 (60%)
Frame = +3
Query: 318 GYVVLQIPGGELAAKFGGKILVIISLGVNSVVSMLIPLAAYYGGWQAVCACRVLQGLSQG 497
G + +IPGG A + GG+ ++++S + S++ LIPL + R+ G++QG
Sbjct: 49 GEYLWEIPGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKRE--VILVLSRLFVGVAQG 106
Query: 498 FTYPSIHNLIGKWVPLEEKSRLGTIIYAGGQLGTA 602
F +P+IH ++ +WVP +E+SR ++ +G LG A
Sbjct: 107 FIFPAIHTVLAQWVPPQERSRSVSLTTSGMYLGAA 141
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +3
Query: 429 LAAYYGGWQAVCACRVLQGLSQGFTYPSIHNLIGKWVPLEEKSRLGTIIYAGGQLGTALQ 608
+ + Y GW AV + + + +TY S+ + K P G ++ GG G+
Sbjct: 476 ITSLYAGWGAVLCRNIPHSVIKFYTYESLKQFMLKSAPANANLDSGQTLFCGGFAGSTAA 535
Query: 609 LMASGF 626
L + F
Sbjct: 536 LCTTPF 541
>01_03_0206 -
13783169-13783651,13783761-13783903,13783962-13784128,
13784641-13785149,13786031-13786312,13786397-13786792,
13787232-13787504
Length = 750
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 160 IFKLQCYSWQWCWHMECE 213
+F L C +WQ WH+ CE
Sbjct: 353 LFNLSCKNWQKTWHLYCE 370
>01_06_0414 + 29182350-29183812,29184211-29184346
Length = 532
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 153 IRHLQTAMLFLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGYVVL 332
+RH T + L YG + + I + + D F+ ++QT +I +SF ++
Sbjct: 248 LRHALTNYRGWILALTYGYSFGVELTIDNVVHQYFYDRFDVNLQTAGLIAASFGMANIIS 307
Query: 333 QIPGGEL 353
+ PGG L
Sbjct: 308 R-PGGGL 313
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +3
Query: 144 ILGIRHLQTAMLFLAMVLAYGMRVNISMAIVAMTDKDNEDSFNWSMQTQSVILSSFFWGY 323
+LG HL+ + A V +Y + N S + + F TQ +SSF GY
Sbjct: 780 LLGTMHLRQSKT-AATVPSYSPKHNFSNLVEIRPARSQFAYFPRQNVTQRTPISSFLSGY 838
Query: 324 VVLQIPGGELAAKF 365
V PG KF
Sbjct: 839 AVQSSPGLTTPTKF 852
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 266 LQLEHANPKRDPLLVLLGLRGAADTWWRTGS*IRRKNPGHHFTWCQFC 409
L L N + L+G A WW + + PG TW +FC
Sbjct: 122 LNLLQCNDQEKVAFATHQLQGPASAWWDNH--MATRPPGMEVTWAEFC 167
>08_01_0568 - 5052608-5052937
Length = 109
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 548 REKQIGHHYLRWWSTWNGSSTYGIW 622
RE +G RWW W G G W
Sbjct: 43 REAILGDLGRRWWRVWEGRDCIGAW 67
>08_02_0214 +
14355436-14355473,14355584-14355596,14355695-14355804,
14355975-14356072,14356167-14356331,14356553-14356664,
14357217-14357751,14357868-14357965,14358084-14359203
Length = 762
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 427 GMSMETTELTPSEMMTRIFPPNLA-ASSPPGICSTT*P 317
GMS+ETT L +++ + I + A ASS P + ST P
Sbjct: 358 GMSLETTTLHSTQLYSMIKASDAALASSDPAVASTCPP 395
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 149 GYSASSNCNVIPGNGVGIWNASQH*HGHRCYDRQG 253
G SS+ + + + N H HGH+CYD G
Sbjct: 115 GAVGSSSSDSLEHHSNHYCNGGHHHHGHQCYDSVG 149
>08_02_0720 +
20394898-20395284,20396062-20396202,20396304-20396669,
20397146-20397388,20397474-20397566,20397892-20398077,
20398259-20398471
Length = 542
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 384 IISLGVNSVVSMLIPLAAYYG-GWQAVCACRVLQGLSQGFTYPSI 515
+ISL + VV + +P AA G GW A +L L +G T+P++
Sbjct: 15 LISLLLLPVVLLALPTAAAAGAGWAPFRARDLLPLLPRGLTWPAV 59
>07_03_1312 -
25699811-25699912,25700410-25700548,25700655-25700722,
25700803-25700895,25706303-25706902
Length = 333
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 281 ANPKRDPLLVLLGLRGAADTW 343
ANP R+PLL+L G GA+ TW
Sbjct: 62 ANPPRNPLLLLHGF-GASATW 81
>04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871
Length = 398
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +2
Query: 308 VLLGLRGAADTWWRTGS*IRRKNPGHHFTWCQFC 409
V RG A WW + PG TW +FC
Sbjct: 63 VAFATRGPASAWWDNH--MATHLPGTEVTWAEFC 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,662,677
Number of Sequences: 37544
Number of extensions: 524028
Number of successful extensions: 1300
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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