Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5k06
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    62   6e-11
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    52   6e-08
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    29   0.48 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   1.9  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   1.9  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   3.4  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   3.4  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   4.4  
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    25   7.7  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   7.7  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 62.1 bits (144), Expect = 6e-11
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
 Frame = +3

Query: 141 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 308
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+     +L G     +A+V Q+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96

Query: 309 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERIT 488
            S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+LV  R+T
Sbjct: 97  CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156

Query: 489 LADVIVFSTLLHAFQHVL 542
           LAD+     L     +VL
Sbjct: 157 LADIFFTCFLKFGATYVL 174


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
 Frame = +3

Query: 21  MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 200
           M  G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  
Sbjct: 1   MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57

Query: 201 ADGKVLLTESNAIAYYVAN------ESLRGGDLATQARVWQWASWSDSELL-PASCA-WV 356
           ADG  L      + Y+         E L   +   +A + +W  + + +++ P +   WV
Sbjct: 58  ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117

Query: 357 FPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQH 536
             + G + + ++  + + +  + +LK+ +  +  RT+LV +R TLAD + F +LL  F +
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLAD-LFFGSLLRIFFN 176

Query: 537 VLXPER 554
            +  E+
Sbjct: 177 SIIDEK 182


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +1

Query: 415 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLSS----VHCCMLSSTCXNPSVRSS 564
           TY PP  Y  D+FS APS+   +     S+S     V     +S   +P VR S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMSPTPEVVSPAATNSAISSPFVRKS 310


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 48  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 227
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 228 SN 233
           SN
Sbjct: 612 SN 613


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 277 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 372
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 217 STFPSALSNAGTFPAGNFFKKSSDL 143
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 228 SNAIAYYVANESLRGGDLATQARVWQWAS 314
           S + A Y+ NE+LR G +   +R+W  AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 307 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 414
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 AEEIWLPKPVSGSGHH 315
           A +IWL  PVSG  H+
Sbjct: 101 AHQIWLSSPVSGPKHY 116


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 24  AAGVLYTYPENFRAYKALIAAQYSG-TDVKVAPNFV-FGE 137
           A G +YT  E+FRA K+L     S  T V+    FV FGE
Sbjct: 329 ALGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGE 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,658
Number of Sequences: 5004
Number of extensions: 53659
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)