Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5k06
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 92 2e-19
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 73 1e-13
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 58 3e-09
AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione ... 39 0.003
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 31 0.44
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 31 0.44
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 31 0.44
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z67756-1|CAA91762.1| 157|Caenorhabditis elegans Hypothetical pr... 29 3.1
U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormon... 29 3.1
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 28 4.1
L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical pr... 28 4.1
L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical ... 28 4.1
AC024832-3|AAF59615.1| 121|Caenorhabditis elegans Hypothetical ... 28 4.1
AF016448-13|AAB65963.1| 239|Caenorhabditis elegans Hypothetical... 28 5.4
Z66516-7|CAA91362.2| 494|Caenorhabditis elegans Hypothetical pr... 27 9.4
U81043-1|AAC47486.1| 494|Caenorhabditis elegans MEX-1 protein. 27 9.4
AL023828-30|CAA19470.2| 494|Caenorhabditis elegans Hypothetical... 27 9.4
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 92.3 bits (219), Expect = 2e-19
Identities = 64/171 (37%), Positives = 92/171 (53%)
Frame = +3
Query: 30 GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 209
G LY +NFR K LIAA+ + V +A G+ ++ KFP G PAFE G
Sbjct: 3 GKLYGNKDNFRTQKVLIAAKLANKTVTLA-----GDAAPAD----KFPLGVTPAFE---G 50
Query: 210 KVLLTESNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNK 389
LL + +I ++ S A QW +++ LLPA +V P + F+K
Sbjct: 51 DALLFGAESIGLHLTGTS-------ANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDK 103
Query: 390 QNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVL 542
+ VE+ K++L L+VLD L+ +T+LV ER++LADV V LL AFQ+VL
Sbjct: 104 KTVEQYKNELNGQLQVLDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVL 154
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 72.9 bits (171), Expect = 1e-13
Identities = 40/106 (37%), Positives = 62/106 (58%)
Frame = +3
Query: 225 ESNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVER 404
E +A+ + + L + A QW +++ LLPA +V P + F+K+ VE+
Sbjct: 24 EGDALLFGAESIGLHLTGTSANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQ 83
Query: 405 AKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVL 542
K++L L+VLD L+ +T+LV ER++LADV V LL AFQ+VL
Sbjct: 84 YKNELNGQLQVLDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVL 129
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 58.4 bits (135), Expect = 3e-09
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Frame = +3
Query: 30 GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 209
G LY +NFR K LIAA+ + V +A G+ ++ KFP G PAFE G
Sbjct: 3 GKLYGNKDNFRTQKVLIAAKLANKTVTLA-----GDAAPAD----KFPLGVTPAFE---G 50
Query: 210 KVLLTESNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNK 389
LL + +I ++ S A QW +++ LLPA +V P + F+K
Sbjct: 51 DALLFGAESIGLHLTGTS-------ANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDK 103
Query: 390 QNVERAKSDLLAALK-VLDGH 449
+ VE+ K++L L+ VLD +
Sbjct: 104 KTVEQYKNELNGQLQYVLDAN 124
>AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione
s-transferase protein43 protein.
Length = 214
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 21 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSE-DFLKKFPAGKVPAFE 197
MA +LY+Y + A++ IA D + P +F E +K+ +F+K PA KVP
Sbjct: 1 MAKPILYSYWRSSCAWRVRIALALKNIDYEYRPIDLFSEESKNNAEFVKHNPAKKVPTL- 59
Query: 198 SADGKVLLTESNAIAYYV 251
+ LTES AI Y+
Sbjct: 60 -VINGLSLTESLAIIEYL 76
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 114 APNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQA 293
+P+F+ +++ LK P +P + KVL T + + +Y+ E + LA Q
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELI----LAVQH 1084
Query: 294 RVWQ 305
++WQ
Sbjct: 1085 QIWQ 1088
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 114 APNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQA 293
+P+F+ +++ LK P +P + KVL T + + +Y+ E + LA Q
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELI----LAVQH 1084
Query: 294 RVWQ 305
++WQ
Sbjct: 1085 QIWQ 1088
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 114 APNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQA 293
+P+F+ +++ LK P +P + KVL T + + +Y+ E + LA Q
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELI----LAVQH 1084
Query: 294 RVWQ 305
++WQ
Sbjct: 1085 QIWQ 1088
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
protein ZK430.1 protein.
Length = 1650
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 264 DFHWQRSKRWHCFQLEAPFHRHFRMQALFRQETSSR-SLRTCWSRQIRNSV 115
DF W+RSK W Q ++ R SS+ S+ TC + IR++V
Sbjct: 153 DFDWKRSKEWQFMQQFTKTETPIPFTSIARATLSSKHSIITCITDHIRHAV 203
>Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical
protein F13A7.10 protein.
Length = 254
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +3
Query: 48 PENFRAYKALI--AAQYS--GTDVKVAPNFVFGET--NKSEDFLKKFPAGKVPAFESADG 209
P FR Y AAQ + VK P+ V K + + K G+VP E A+G
Sbjct: 24 PNTFRIYSMRFCPAAQRALIYASVKKIPSEVININLQQKPDWYFTKNYKGQVPTLEHAEG 83
Query: 210 KVLLTESNAIAYYV 251
K L+ ES I Y+
Sbjct: 84 KKLVIESAVIPEYL 97
>Z67756-1|CAA91762.1| 157|Caenorhabditis elegans Hypothetical
protein R07A4.2 protein.
Length = 157
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -1
Query: 170 KLLQEVFGLVGLAKYEIRCYFHISPGILCGDQRFISAEVFRISV 39
K+LQ +FG + L+ CY + + CG++ F S++VF++ V
Sbjct: 22 KILQLIFGFINLSA-NYWCYPN-QHFLYCGERYFTSSQVFQLIV 63
>U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 78 protein.
Length = 387
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 312 SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAAL 431
S+ ++ +L A C W + + + +K+NV + KS L+ L
Sbjct: 298 SFEENAILKALCCWQTAHFKLEECDKENVRKQKSLLVQCL 337
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 28.3 bits (60), Expect = 4.1
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = -1
Query: 308 PLPDTGLGSQISSAETFIGNVVSDGI--AFS*KHLSIGT-FECRHFSGRKLLQEVFGLVG 138
P+ + + +S TF+G VVSDGI S S+ T FE R R++L+ V+
Sbjct: 514 PMNGSTIREDFASESTFLGRVVSDGIMPRISASSNSVLTEFETRF---RRILKRVYR--S 568
Query: 137 LAKYEIR 117
L ++EIR
Sbjct: 569 LQQHEIR 575
>L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical
protein C02D5.3c protein.
Length = 254
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 144 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 251
K + F K G+VPA E +GK ++ ES I Y+
Sbjct: 62 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL 97
>L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical
protein C02D5.3a protein.
Length = 537
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 144 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 251
K + F K G+VPA E +GK ++ ES I Y+
Sbjct: 345 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL 380
>AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical
protein K10F12.4a protein.
Length = 309
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 156 FLKKFPAGKVPAFESADGKVLLTESNAIAYYV 251
+L K P G+VPA E +GKV + ESN I Y+
Sbjct: 138 YLPKSPIGRVPALE-INGKV-VWESNVIVEYL 167
>AC024832-3|AAF59615.1| 121|Caenorhabditis elegans Hypothetical
protein Y57E12AL.2 protein.
Length = 121
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 354 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 482
VF L ++ F +N E+ KS++LAA G TF+ T +
Sbjct: 35 VFALLAVVAFANRNPEQMKSEMLAAGVSAAGVATISTFMETHK 77
>AF016448-13|AAB65963.1| 239|Caenorhabditis elegans Hypothetical
protein F41E6.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 171 ETSSRSLRTCWSRQIRNSVLLSHQSRNIVR 82
ET +R CWSR N+V R++VR
Sbjct: 167 ETGGAIVRDCWSRVFSNAVKNPRARRDVVR 196
>Z66516-7|CAA91362.2| 494|Caenorhabditis elegans Hypothetical
protein W03C9.7 protein.
Length = 494
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 18 TMAAGVLYTYPENFRAYKALIAA 86
+MA+G ++ PEN R Y A+I A
Sbjct: 369 SMASGKMFGKPENIRTYGAMIRA 391
>U81043-1|AAC47486.1| 494|Caenorhabditis elegans MEX-1 protein.
Length = 494
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 18 TMAAGVLYTYPENFRAYKALIAA 86
+MA+G ++ PEN R Y A+I A
Sbjct: 369 SMASGKMFGKPENIRTYGAMIRA 391
>AL023828-30|CAA19470.2| 494|Caenorhabditis elegans Hypothetical
protein W03C9.7 protein.
Length = 494
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 18 TMAAGVLYTYPENFRAYKALIAA 86
+MA+G ++ PEN R Y A+I A
Sbjct: 369 SMASGKMFGKPENIRTYGAMIRA 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,480
Number of Sequences: 27780
Number of extensions: 311554
Number of successful extensions: 904
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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