Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5j22
         (114 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    25   5.4  
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    25   7.1  

>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 58  YNLSLIIQPFYFFSFL 105
           ++LSL++QP Y F F+
Sbjct: 57  FHLSLLVQPMYLFRFM 72


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 58  YNLSLIIQPFYFFSFL 105
           +++SL++QP Y F F+
Sbjct: 57  FHISLLVQPMYLFQFM 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,297
Number of Sequences: 27780
Number of extensions: 14046
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 12,740,198
effective HSP length: 19
effective length of database: 12,212,378
effective search space used: 219822804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)