Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5j22
         (114 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   5.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    18   9.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 64  LSLIIQPFYFFSFL 105
           LS  I+P YF S +
Sbjct: 452 LSYFIEPIYFHSIV 465


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 66  IAYYSAILFFFFFKK 110
           +AY+  + FFF   K
Sbjct: 472 VAYFMFLTFFFIHYK 486


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 66  IAYYSAILFFFFFKK 110
           +AY+  + FFF   K
Sbjct: 458 VAYFMFLTFFFIHYK 472


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 66  IAYYSAILFFFFFKK 110
           +AY+  + FFF   K
Sbjct: 492 VAYFMFLTFFFIHYK 506


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 66  IAYYSAILFFFFFKK 110
           +AY+  + FFF   K
Sbjct: 441 VAYFMFLTFFFIHYK 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,072
Number of Sequences: 438
Number of extensions: 172
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 18
effective length of database: 138,459
effective search space used:  2630721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)