Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5j20
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    32   0.062
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   7.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.4  

>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 31.9 bits (69), Expect = 0.062
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 310 MLGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAK 408
           + GR P      +QK L +G+K+FDSGDY + K
Sbjct: 40  LYGRLPQRKDLLVQK-LQQGRKYFDSGDYALNK 71


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 305 MRCWVEGPVVILHFCKKD*PRDKNSLILATIKW 403
           M+C  E P+  + +   + P + + L+L +I W
Sbjct: 40  MKCQCENPMAAITYADIEYPHNTHFLLLDSISW 72


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 342 ISAKKTSQGTKIL*FWRLSNGKAETRQL 425
           ISA + ++  +++ +W L NGK +TR+L
Sbjct: 873 ISAGQPARAQEMV-YWTLRNGKYKTREL 899


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 342 ISAKKTSQGTKIL*FWRLSNGKAETRQL 425
           ISA + ++  +++ +W L NGK +TR+L
Sbjct: 873 ISAGQPARAQEMV-YWTLRNGKYKTREL 899


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,378
Number of Sequences: 5004
Number of extensions: 25898
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)