Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5j16
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    27   2.0  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   3.4  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   6.0  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    25   6.0  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   7.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.9  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -3

Query: 461 TIQFVFLYLLYIAL*KLSCL*QGRLYRQTDKRLLLFHGLLTWLASQVTLGSGLCLQFCIF 282
           TI    L LL++     SC+ +G      D R+ L   ++      +T+ + L +QF + 
Sbjct: 381 TIDSFSLKLLFLKFMICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQFILA 440

Query: 281 SLNR 270
             NR
Sbjct: 441 KSNR 444


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 174 VGTHCPSKRNFLAASATFLDISWLFF**FVL---LYSCILKIFLN 49
           VG HCP  R  +A+ +  + + W+ F   V+    +SC L  F++
Sbjct: 62  VGLHCPFHRRGIASLSVCVALHWIAFSCSVMCHFAWSCALPCFVD 106


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 386 ITDPVTGKKVSK-EQYKEDIERQTELYGRLKSTFNYNKAP 502
           + DPVTG++VSK E  K + +R  EL    K       AP
Sbjct: 17  VLDPVTGEQVSKTELKKREKQRARELAKAKKQAEKAASAP 56


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 358 KRSRLSVWRYNRPCYRQ 408
           KR++L  W   +PCY Q
Sbjct: 90  KRNKLIAWMRKKPCYEQ 106


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 299 DIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKE 436
           D +++   P+KL + +     + V+P  ++ +   G+K   E+ K+
Sbjct: 196 DQMVLMQFPDKLPRFMGDADVDPVWPSSEVKEEEAGEKTDVEEKKD 241


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 470 TFHTIQFVFLYLLYIA 423
           TFH I F FLYL  IA
Sbjct: 87  TFHRIPFQFLYLAVIA 102


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 277 RENMQNWRHSPDPSVT*EANQVNN 348
           RE++ +  HSP PSV+   N +NN
Sbjct: 121 RESLNSLCHSPAPSVSSCGNALNN 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,593
Number of Sequences: 5004
Number of extensions: 48295
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)