Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5j16
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-8|AAB53829.1|  160|Caenorhabditis elegans Hypothetical pr...    52   4e-07
Z74043-4|CAA98541.1|  733|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical...    31   0.58 
AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical...    29   3.1  
Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    28   5.4  
U80436-4|AAC71111.1|  552|Caenorhabditis elegans Uncoordinated p...    28   5.4  
U80436-3|AAL06029.3|  633|Caenorhabditis elegans Uncoordinated p...    28   5.4  
U80436-2|AAC71110.1|  928|Caenorhabditis elegans Uncoordinated p...    28   5.4  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    28   5.4  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    28   5.4  
Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U00048-8|AAB53829.1|  160|Caenorhabditis elegans Hypothetical
           protein C05D11.10 protein.
          Length = 160

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
 Frame = +2

Query: 191 AKIRVKRLELDENLLMYFRKEEFYYCHDSEKICKTGDIVLIQALP--EKLTKLITHEIKE 364
           A++R +  E +  L  YF +   ++  D   +   GD VLI+ +    +    ++H +  
Sbjct: 34  AQVRCQMNEFNIYLKKYFARSFDFWALDKTSLGNIGDTVLIKQIDGSSRPKANVSHAVDR 93

Query: 365 VVYPFGDITDPVTGKKVSKEQYKEDIE 445
           VV+ FG+I DPVTG+K+  + + ++I+
Sbjct: 94  VVFKFGNIVDPVTGRKIFNDTFADEID 120


>Z74043-4|CAA98541.1|  733|Caenorhabditis elegans Hypothetical
           protein T19B10.8 protein.
          Length = 733

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +2

Query: 356 IKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELYGRLKSTFNYNKAPPRGWQDGKK 529
           +  V++ + +  D +TG++V ++ YKED++R  +   R K   + N  P +  + G+K
Sbjct: 312 VSRVLWSYAENLDTLTGRQVVQKFYKEDVDRNIK---RAKLVRHVNDVPSKEIKIGEK 366


>AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical
           protein T24E12.2 protein.
          Length = 251

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +2

Query: 392 DPVTGKKVSKEQYKEDIERQTELYGRLKSTFNYNKAPPRGWQDGKKDF 535
           DP  GKKV   Q K  +  Q+ LYG  +ST +YN   P+   + K+D+
Sbjct: 155 DP-NGKKVVP-QIKMFVRNQSSLYGNQRSTKSYNLPWPKIRSEDKEDW 200


>AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22a protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -2

Query: 228 FSSNSNLFT----LIFAAFCLTVGTHCPSKRNFLAASATFLD 115
           F S +N+FT    +IFA++C     +C S+R     + +F+D
Sbjct: 238 FMSIANMFTRMDAIIFASYCEFAARYCRSRRLMCDVTCSFVD 279


>Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical
           protein C08F8.6 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +2

Query: 275 SEKICKTGDIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQT 454
           +EK+ K  ++ L +    K TK +T   KE+V    +       K+  KE+Y++D  ++ 
Sbjct: 321 TEKVIKKKEVELAEGKSHKETKEVTKVSKEIVEEKKE-EKKEEKKEEKKEKYEDD--KKE 377

Query: 455 ELY 463
           ELY
Sbjct: 378 ELY 380


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
            protein 73, isoform f protein.
          Length = 2140

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 44   ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 151
            I+F NI  I E+ KTN  K  ++ S N   A   F+
Sbjct: 1854 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 1889


>U80436-4|AAC71111.1|  552|Caenorhabditis elegans Uncoordinated
           protein 73, isoform d protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 44  ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 151
           I+F NI  I E+ KTN  K  ++ S N   A   F+
Sbjct: 208 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 243


>U80436-3|AAL06029.3|  633|Caenorhabditis elegans Uncoordinated
           protein 73, isoform e protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 44  ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 151
           I+F NI  I E+ KTN  K  ++ S N   A   F+
Sbjct: 289 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 324


>U80436-2|AAC71110.1|  928|Caenorhabditis elegans Uncoordinated
           protein 73, isoform c protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 44  ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 151
           I+F NI  I E+ KTN  K  ++ S N   A   F+
Sbjct: 294 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 329


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 44   ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 151
            I+F NI  I E+ KTN  K  ++ S N   A   F+
Sbjct: 1854 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 1889


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 44   ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 151
            I+F NI  I E+ KTN  K  ++ S N   A   F+
Sbjct: 1854 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 1889


>Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical
           protein T27F6.2 protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 483 NVDFNLPYNSVCLSISSLYCSLETFLPVTGS 391
           N DFN  YN  C + SS   S+ TF+   G+
Sbjct: 161 NCDFN--YNGYCYTFSSTTNSINTFISAQGT 189


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 404 GKKVSKEQYKEDIERQTEL-YGRLKSTFNYNKAPPR 508
           GKK+S +Q +   ERQTE  +  LK +  + + P +
Sbjct: 8   GKKLSAKQMRAKFERQTECDFDELKESRKWREPPEK 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,113
Number of Sequences: 27780
Number of extensions: 257966
Number of successful extensions: 682
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)