Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5j10
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 190 1e-49
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 180 2e-46
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 28 0.98
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 4.0
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 26 4.0
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 26 5.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 25 9.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.1
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 190 bits (464), Expect = 1e-49
Identities = 89/139 (64%), Positives = 113/139 (81%)
Frame = +3
Query: 219 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 398
S+F V+GGHRAI ++RIGG++ ++ EG HF IPW + I YD+R++PR ISS TG+KDL
Sbjct: 35 SLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDL 94
Query: 399 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 578
QMVNI+ RVLSRPD + L +YR LG DYDE+VLPSI NEVLKSVVA+FNASQLITQR++
Sbjct: 95 QMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRER 154
Query: 579 VSLLIXRELVERAADFNII 635
VS L+ L++RAA FNI+
Sbjct: 155 VSRLVRENLMKRAARFNIL 173
>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 180 bits (437), Expect = 2e-46
Identities = 82/138 (59%), Positives = 110/138 (79%)
Frame = +3
Query: 219 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 398
S++ V GG RA++F+R+ GVQ+ V EG HF IPW Q I+YD+R+RPR I++ TGSKDL
Sbjct: 25 SIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDL 84
Query: 399 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 578
QMV+++LRVL RP+ ML +Y+ LG DYDE+VLPSI NE+LKSVVA+F+A++LITQR+
Sbjct: 85 QMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREV 144
Query: 579 VSLLIXRELVERAADFNI 632
VS I +ELV+RA +F I
Sbjct: 145 VSAKIRQELVQRATEFGI 162
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 0.98
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 279 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKD 395
Q H F + ++ +PW+ P + R + PTG+ D
Sbjct: 324 QIHYFEDFGYYHLPWYHCPTDVQSHATARCLCDPTGTID 362
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 538 ATTDFRTSLHIDGKTFSS*SVPSCLYIVASILASGRESTRREMFTICKS 392
+++DF +S+ SS S+PS V+SIL+S S +I S
Sbjct: 549 SSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSS 597
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 387 SKDLQMVNISLRVLSRPDANML--ATMYRQLGTDYDEKVLPSICNEVLKSVV 536
S DLQM ++ ++ L ++ L T+Y + +DY+ V S+C E+L +
Sbjct: 1252 SNDLQMESVCMKFLREKLSHELKELTVYYMVESDYEPDV--SLCPELLSLAI 1301
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 457 QCTDNLEQIMMKRFCHLYAMKS*NRLLPNSMP 552
QC LE + RF H Y L+PN+MP
Sbjct: 174 QCKMVLENHITSRFPHFYTKLPDVSLVPNNMP 205
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 229 PWKEVIVPLCSTE*EEYNSTYSLKVCTSVYRGFNTPSF 342
P + PL T E ++S+ SLK + +++ FN +F
Sbjct: 114 PHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNF 151
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 499 KTFSS*SVPSCLYIVASILASGRESTRREMFTICKSFEPVGEDIL 365
KTF+S PS I S+ R T+ ++F + +SF+ +G + L
Sbjct: 453 KTFASKIKPSHNIISFSLSLVKRFGTKNDLFFLRRSFKNMGIETL 497
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 211 SPNRCLPWKEVIVPLCSTE*EEYNST 288
SP+ LP+K ++P+ T EE NS+
Sbjct: 259 SPSPSLPFKTPLLPVTKTPLEEANSS 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,437
Number of Sequences: 5004
Number of extensions: 54379
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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