Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5j10
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702...   177   5e-45
02_04_0362 - 22366668-22367516                                        171   3e-43
04_04_0143 - 23091613-23092467                                        171   4e-43
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925...   146   1e-35
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133...   136   1e-32
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580...    94   1e-19
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658...    32   0.33 

>03_06_0626 -
           35169352-35169546,35169736-35169948,35170102-35170272,
           35170826-35170942,35171078-35171233
          Length = 283

 Score =  177 bits (432), Expect = 5e-45
 Identities = 82/138 (59%), Positives = 109/138 (78%)
 Frame = +3

Query: 219 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 398
           S++ VEGGHRAI+FNR+ G++  V+ EG HF IPWF+ PIIYD+R+RP  + S +GS+DL
Sbjct: 30  SLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDL 89

Query: 399 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 578
           QMV I LRVL+RP    L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ 
Sbjct: 90  QMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREA 149

Query: 579 VSLLIXRELVERAADFNI 632
           VS  I + L ERA++FNI
Sbjct: 150 VSREIRKILTERASNFNI 167


>02_04_0362 - 22366668-22367516
          Length = 282

 Score =  171 bits (417), Expect = 3e-43
 Identities = 78/141 (55%), Positives = 107/141 (75%)
 Frame = +3

Query: 213 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 392
           S +++TV+GG RA++F+R  GV     +EG HF +PW Q P I+DIR+RP   SS +G+K
Sbjct: 30  STALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTK 89

Query: 393 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 572
           DLQMV+++LRVL+RPD + L  ++  LG +YDEKVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 90  DLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTER 149

Query: 573 QQVSLLIXRELVERAADFNII 635
             VS L+   L+ RAA+FNI+
Sbjct: 150 PHVSALVRDSLIRRAAEFNIV 170


>04_04_0143 - 23091613-23092467
          Length = 284

 Score =  171 bits (416), Expect = 4e-43
 Identities = 79/141 (56%), Positives = 105/141 (74%)
 Frame = +3

Query: 213 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 392
           S S++TV+GG RA++F+R  GV      EG HF +PW Q P ++DIR+RP   SS +G+K
Sbjct: 29  SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88

Query: 393 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 572
           DLQMVN++LR+LSRPD   L T++  LG +YD+KVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 89  DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148

Query: 573 QQVSLLIXRELVERAADFNII 635
             VS L+   L+ RA +FNII
Sbjct: 149 PHVSALVRDALIRRAREFNII 169


>07_01_1055 -
           9253936-9254130,9254271-9254483,9254588-9254758,
           9255743-9255859,9257021-9257186,9258885-9258934,
           9259095-9259268
          Length = 361

 Score =  146 bits (355), Expect = 1e-35
 Identities = 70/120 (58%), Positives = 90/120 (75%)
 Frame = +3

Query: 273 GVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANML 452
           G    V+ EG HF IPWF+ PIIYD+R+RP  + S +GS+DLQMV I LRVL+RP    L
Sbjct: 126 GTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKL 185

Query: 453 ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIXRELVERAADFNI 632
            T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS  I + L ERA +FNI
Sbjct: 186 PTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFNI 245



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +3

Query: 219 SVFTVEGGHRAIMFNRIGGVQ 281
           S++ VEGGHRAI+FNRI G++
Sbjct: 36  SLYNVEGGHRAIVFNRIQGIK 56


>03_06_0437 -
           33912326-33912520,33912870-33912998,33913147-33913317,
           33913877-33913993,33914150-33914800
          Length = 420

 Score =  136 bits (329), Expect = 1e-32
 Identities = 67/117 (57%), Positives = 88/117 (75%)
 Frame = +3

Query: 282 QHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATM 461
           Q V+ EG  F I  F+ PIIYD+R+RP  + S +GS+DLQMV I LRVL+RP    L T+
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275

Query: 462 YRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIXRELVERAADFNI 632
           YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS  I + L ERA++FNI
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNI 332


>03_06_0427 -
           33857008-33857137,33857224-33857258,33857966-33858046,
           33858213-33858338,33858410-33858568,33858797-33858934,
           33859084-33859155,33859359-33860273
          Length = 551

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 51/110 (46%), Positives = 70/110 (63%)
 Frame = +3

Query: 246 RAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRV 425
           R I  N+   + Q +  E  HF IPWF+   I+D+  RP  + S +GS+DLQMV   L V
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382

Query: 426 LSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQ 575
           L+RP    L T YR LG ++ E+VL S+ +E LK+VVA++NASQLI  R+
Sbjct: 383 LTRP----LPTKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428


>05_02_0099 -
           6582498-6582725,6583148-6583235,6583437-6583830,
           6585855-6585990,6586413-6586931
          Length = 454

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 234 EGGHRAIMFNRI--GGVQQHVFTEGMHFRIPWFQYPIIYDIRSRP 362
           EGGHR +++  +  GG+Q+H++  G   +I  F    IY ++ RP
Sbjct: 194 EGGHRLLVYEFMANGGLQEHLYPNGAFEKIETFS---IYLVKQRP 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,839
Number of Sequences: 37544
Number of extensions: 346342
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)