Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5j10
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   225   3e-59
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...   158   4e-39
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    31   0.91 
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   4.9  

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  225 bits (549), Expect = 3e-59
 Identities = 104/141 (73%), Positives = 122/141 (86%)
 Frame = +3

Query: 213 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 392
           +QS+FTVE GHRAIMFNRIGG+   ++ EG+HFRIPWFQYPIIYDIR+RP +I SPTGSK
Sbjct: 37  AQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSK 96

Query: 393 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 572
           DLQMVNI LRVLSRP+   L  +YR LG +++E+VLPSICNEVLK VVAKFNASQLITQR
Sbjct: 97  DLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQR 156

Query: 573 QQVSLLIXRELVERAADFNII 635
           QQVS+L+ + L+ERA DFNII
Sbjct: 157 QQVSMLVRKTLIERALDFNII 177


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score =  158 bits (383), Expect = 4e-39
 Identities = 75/139 (53%), Positives = 101/139 (72%)
 Frame = +3

Query: 219 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 398
           +++ V+GG RA++F+R  GV+  V  EG HF IPW Q PII+DIRS PR +++ TGSKDL
Sbjct: 29  ALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDL 88

Query: 399 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 578
           Q VNI+LR+L RP  + L  +Y  +G DY E+VLPSI NEVLK+VVA+F+A ++ITQR+ 
Sbjct: 89  QNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREV 148

Query: 579 VSLLIXRELVERAADFNII 635
           VS      L ERAA F ++
Sbjct: 149 VSQRASVALRERAAQFGLL 167


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 298 KVCTSVYRGFNTPSFMISDPDLARYLPRLVQKI 396
           K  T +  GFN PS MISD +L   + R+++ +
Sbjct: 291 KTSTDIIDGFNVPSNMISDDNLPALIYRVIETL 323


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 368 DIFPDWFKRFTDGKHFPPSTFSTRCQYASNNVQTTWN 478
           D  P++  ++ + +  PP   STRC+Y S +V T  N
Sbjct: 405 DTVPNYGLQYQNWEVLPPK-LSTRCEYISEDVATACN 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,790
Number of Sequences: 27780
Number of extensions: 305930
Number of successful extensions: 614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)