Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5j09
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 67 9e-12
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 67 9e-12
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 60 2e-09
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 45 4e-05
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.8
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.8
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.8
Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 28 4.9
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 6.5
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.5
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 6.5
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 28 6.5
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 27 8.6
U97001-6|AAB52257.2| 374|Caenorhabditis elegans Hypothetical pr... 27 8.6
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 67.3 bits (157), Expect = 9e-12
Identities = 56/186 (30%), Positives = 78/186 (41%), Gaps = 38/186 (20%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLLDCAT-RDDPGLRVRYQG-------PCSEGNVGF-PAC- 295
C N VCGTDGKTY NEC L A ++ + V +G PC + GF +C
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGFWGSCV 382
Query: 296 -------------HCDYDLNQVCGSDNHTYDXXXXXXXXXX-TNPGLSILYSGLCA---- 421
C+ + VC ++ T+D T + + + G C
Sbjct: 383 VKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGVC 442
Query: 422 ---DEVK------IVDGPSKYPSCTCTREMKPVCGSDGITYNNDC-LLNCATINDSRLGI 571
D K +VDG K +CT E K VCGSDG TY+N+C L N A + + +
Sbjct: 443 ATFDSCKKPQVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFV 502
Query: 572 EYYGPC 589
+Y C
Sbjct: 503 KYNSAC 508
Score = 53.6 bits (123), Expect = 1e-07
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 42/190 (22%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLL---DCATRDDPGLRVRYQGPCSEGNV------------ 280
C RPVC T+G+T++NEC + C T+ ++V++QG C G
Sbjct: 397 CEDVMRPVCATNGETFDNECEMKKKSCETKSM--IKVKHQGTCGIGVCATFDSCKKPQVC 454
Query: 281 ----GFPAC---HCDYDLNQVCGSDNHTY-DXXXXXXXXXXTNPGLSILYSGLC-ADEVK 433
G P C C + +VCGSD TY + + + Y+ C A ++K
Sbjct: 455 VVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLK 514
Query: 434 ---------IVDGPSKYPSCTCT--------REMKPVCGSDGITYNNDCLLNCATINDSR 562
V G ++ C C E K VCG+DG+TY+++C + + + S+
Sbjct: 515 KEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSK 574
Query: 563 LGI-EYYGPC 589
+ + G C
Sbjct: 575 FVMTAFEGKC 584
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 458 PSCTCTREMKPVCGSDGITYNNDCLLNCATINDSR 562
P+C + P+CGSDGI YNN C LN + D R
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQR 717
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 107 QVIATLAYPPSC---ACYRNQRPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPC 265
QV + P C +C + VCG+DGKTY+NEC L + A + V+Y C
Sbjct: 452 QVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 508
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 131 PPSCACYRNQ--RPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPCSE 271
P C Y + + VCGTDG TY++EC + A + ++G C E
Sbjct: 537 PDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDE 586
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Frame = +2
Query: 416 CADEVKIVDGPSKYPSCTCTREMK----------PVCGSDGITYNNDCLLNCATIN 553
C K V PS +P C C + VCGSDG TY+N C L N
Sbjct: 845 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACN 900
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +2
Query: 443 GPSKYPSCTC----TREMKPVCGSDGITYNNDCLLNCATINDSR 562
G + P C C T VCG+DG TY N+C L A + +
Sbjct: 310 GVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 353
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 134 PSCACYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRV 247
P+C N P+CG+DG YNN+C L+ + RD + V
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQREIHV 721
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 67.3 bits (157), Expect = 9e-12
Identities = 56/186 (30%), Positives = 78/186 (41%), Gaps = 38/186 (20%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLLDCAT-RDDPGLRVRYQG-------PCSEGNVGF-PAC- 295
C N VCGTDGKTY NEC L A ++ + V +G PC + GF +C
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGFWGSCV 390
Query: 296 -------------HCDYDLNQVCGSDNHTYDXXXXXXXXXX-TNPGLSILYSGLCA---- 421
C+ + VC ++ T+D T + + + G C
Sbjct: 391 VKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGVC 450
Query: 422 ---DEVK------IVDGPSKYPSCTCTREMKPVCGSDGITYNNDC-LLNCATINDSRLGI 571
D K +VDG K +CT E K VCGSDG TY+N+C L N A + + +
Sbjct: 451 ATFDSCKKPQVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFV 510
Query: 572 EYYGPC 589
+Y C
Sbjct: 511 KYNSAC 516
Score = 53.6 bits (123), Expect = 1e-07
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 42/190 (22%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLL---DCATRDDPGLRVRYQGPCSEGNV------------ 280
C RPVC T+G+T++NEC + C T+ ++V++QG C G
Sbjct: 405 CEDVMRPVCATNGETFDNECEMKKKSCETKSM--IKVKHQGTCGIGVCATFDSCKKPQVC 462
Query: 281 ----GFPAC---HCDYDLNQVCGSDNHTY-DXXXXXXXXXXTNPGLSILYSGLC-ADEVK 433
G P C C + +VCGSD TY + + + Y+ C A ++K
Sbjct: 463 VVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLK 522
Query: 434 ---------IVDGPSKYPSCTCT--------REMKPVCGSDGITYNNDCLLNCATINDSR 562
V G ++ C C E K VCG+DG+TY+++C + + + S+
Sbjct: 523 KEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSK 582
Query: 563 LGI-EYYGPC 589
+ + G C
Sbjct: 583 FVMTAFEGKC 592
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 107 QVIATLAYPPSC---ACYRNQRPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPC 265
QV + P C +C + VCG+DGKTY+NEC L + A + V+Y C
Sbjct: 460 QVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 516
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 131 PPSCACYRNQ--RPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPCSE 271
P C Y + + VCGTDG TY++EC + A + ++G C E
Sbjct: 545 PDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDE 594
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Frame = +2
Query: 416 CADEVKIVDGPSKYPSCTCTREMK----------PVCGSDGITYNNDCLL 535
C K V PS +P C C + VCGSDG TY+N C L
Sbjct: 784 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCEL 833
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +2
Query: 443 GPSKYPSCTC----TREMKPVCGSDGITYNNDCLLNCATINDSR 562
G + P C C T VCG+DG TY N+C L A + +
Sbjct: 318 GVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 361
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 59.7 bits (138), Expect = 2e-09
Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Frame = +2
Query: 131 PPSCACYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSE----GNVGFPACH 298
PP C C RPVCGTD TYNN C L C R + L Y G C + VG P C
Sbjct: 16 PPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKECEKVGTPICD 75
Query: 299 CDYDLNQVCGSDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCTCTR 478
+ + +D H + L+ L+ G C+ + +CT T
Sbjct: 76 ---NFGETHINDCHFAQFQCIMKKSMGLS--LTKLHMGRCSSK-------DCNHNCTNT- 122
Query: 479 EMKPVCGSDGITYNNDCL 532
E PVC ++G Y N C+
Sbjct: 123 EFDPVCDTNGSVYRNLCV 140
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +2
Query: 428 VKIVDGPSKYPSCTCTREMKPVCGSDGITYNNDCLLNCATINDSRLGIEYYGPCADK 598
+ + G S P C C ++PVCG+D +TYNN C L C + L Y G C DK
Sbjct: 7 ILLFTGFSPPPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDK 63
Score = 45.2 bits (102), Expect = 4e-05
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 2/136 (1%)
Frame = +2
Query: 137 SCACYRNQRPVCGTDGKTYNNECLL--DCATRDDPGLRVRYQGPCSEGNVGFPACHCDYD 310
S C + P+CGT+G T+ N C L + + + V Y G C + N C D
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDTN-------CPSD 821
Query: 311 LNQVCGSDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKP 490
+ VC S T+ L D+ ++ + K + C +E P
Sbjct: 822 FSPVCDSKGSTHQNICHFGVKRCI--AERTFGDVLTIDKFEVCN-EVKECNNACPKEYSP 878
Query: 491 VCGSDGITYNNDCLLN 538
VC S+G N+C L+
Sbjct: 879 VCASNGQNIVNECELD 894
Score = 43.2 bits (97), Expect = 2e-04
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 7/138 (5%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSE---GNVGFPACHCDYDLN 316
C ++ P+C +D TY N C D L V ++G CSE PA + D +
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSECLDSPCALPAENSP-DES 648
Query: 317 QVCGSDNHTYDXXXXXXXXXXTNPG----LSILYSGLCADEVKIVDGPSKYPSCTCTREM 484
VC D T G L++ Y G+C V+ D T +
Sbjct: 649 FVCLEDQSTKSLCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCD----------TEKP 698
Query: 485 KPVCGSDGITYNNDCLLN 538
PVC G T+ +C LN
Sbjct: 699 DPVCTDSGATFLTECELN 716
Score = 42.3 bits (95), Expect = 3e-04
Identities = 46/155 (29%), Positives = 59/155 (38%), Gaps = 13/155 (8%)
Frame = +2
Query: 164 PVCGTDGKTYNNECLLD---C--ATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLNQVC- 325
PVC T+G T+ N CL+D C ++ ++V YQG C CD D VC
Sbjct: 931 PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQ-------PCDEDKTPVCD 983
Query: 326 GSDNH--TYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKPVCG 499
G+ H N LSI YSG C P C VC
Sbjct: 984 GTITHPNICRFRIAQCEAERVNKTLSIAYSGECC----------LLPKGEC-ESSGAVCD 1032
Query: 500 SDGITYNNDCLLN-----CATINDSRLGIEYYGPC 589
S+G T+ N C+ TI+ L I + G C
Sbjct: 1033 SEGQTHMNHCVYQQRRCMAQTISQKTLNIVHTGEC 1067
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 461 SCTCTREMKPVCGSDGITYNNDCLLN---CATINDSRLGIEYYGPCAD 595
S C P+CG++G+T+ N C L C + N S + + Y G C D
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESAN-STIEVAYTGMCCD 815
Score = 35.5 bits (78), Expect = 0.033
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Frame = +2
Query: 134 PSCACYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACH--CDY 307
P C + +PVC + G + N C + + E + AC C
Sbjct: 533 PKPNCPTDGQPVCDSAGNLHGNLCEFTYSRCIAASKGHQIHIATEENCISKEACQMPCTD 592
Query: 308 DLNQVCGSDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPS 463
D + +C SD TY+ + L +L+ G C++ +D P P+
Sbjct: 593 DKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE---CLDSPCALPA 641
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 470 CTREMKPVCGSDGITYNNDCLLNCATINDSRLGIEYYGPCAD 595
CT + P+C SD TY N C DS L + + G C++
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE 631
Score = 34.3 bits (75), Expect = 0.075
Identities = 35/163 (21%), Positives = 56/163 (34%), Gaps = 15/163 (9%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNEC---LLDCATRDDPG--LRVRYQGPCSEGNVGFPACHCDYD 310
C ++ PVC T +T+ N C C G + + + G C C D
Sbjct: 257 CDKSWDPVCDTRNRTHKNVCQFKFFACKINKIDGSVIDIAHSGACRARKSTCITCPKDEK 316
Query: 311 LNQVCGSDNHTYDXXXXXXXXXXT-----NPGLSILYSGLCADEVKIVDGPSKYPSCTCT 475
+C + N T+ + +++ C + + TC+
Sbjct: 317 KIPICDNRNMTHPTLCSFIQYNCEARNNEDEERVLVHIKSCHERSPQFTLKDEICPRTCS 376
Query: 476 REMKPVCGSDGITYNNDCLLNCATINDSRLGI-----EYYGPC 589
R++KPVC T+ N C N +LGI Y PC
Sbjct: 377 RDVKPVCDEANNTHQNLCHFQQYNCNMRKLGIRSPYLRYLRPC 419
Score = 32.7 bits (71), Expect = 0.23
Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 30/163 (18%)
Frame = +2
Query: 131 PPSCACYRNQR-PVCGTDGKTYNNECLL---DCATR--DDPGLRVRYQGPCSEG------ 274
PP +C + PVC G T+ EC L +C + D P L V QG C +
Sbjct: 688 PPVESCDTEKPDPVCTDSGATFLTECELNIENCKLKKLDQPKLVVVSQGICEKDMLTDDF 747
Query: 275 ---------NVGFP-------ACHCDYDLNQVCGSDNHTYD--XXXXXXXXXXTNPGLSI 400
N+ F + CD + +CG++ T+ N + +
Sbjct: 748 SSNRNFQKPNIEFKRENTFNCSMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEV 807
Query: 401 LYSGLCADEVKIVDGPSKYPSCTCTREMKPVCGSDGITYNNDC 529
Y+G+C D C + PVC S G T+ N C
Sbjct: 808 AYTGMCCD-------------TNCPSDFSPVCDSKGSTHQNIC 837
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 143 ACYRNQRPVCGTDGKT-------YNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACHC 301
+C + +PVC + G+T +N++C+ D + L + YQG C PA C
Sbjct: 1072 SCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKCC------PA-GC 1124
Query: 302 DYDLNQVCGSDNHTY 346
+L+ +C + Y
Sbjct: 1125 TDELSVICDQHENIY 1139
Score = 29.1 bits (62), Expect = 2.8
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 17/165 (10%)
Frame = +2
Query: 146 CYRNQRPVCGTDGK-TYNNEC---LLDC-ATRDDPGLRVRYQGPCSEGNVGFPACHCDYD 310
C ++ PVC DG T+ N C + C A R + L + Y G C P C+
Sbjct: 974 CDEDKTPVC--DGTITHPNICRFRIAQCEAERVNKTLSIAYSGECCL----LPKGECESS 1027
Query: 311 LNQVCGSD-----NHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCTCT 475
VC S+ NH + L+I+++G C +C
Sbjct: 1028 -GAVCDSEGQTHMNHCVYQQRRCMAQTISQKTLNIVHTGECC------------ALASCP 1074
Query: 476 REMKPVCGSDGIT-------YNNDCLLNCATINDSRLGIEYYGPC 589
+ +PVC S G T +N+ C+ + ++ L ++Y G C
Sbjct: 1075 KTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKC 1119
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 45.2 bits (102), Expect = 4e-05
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Frame = +2
Query: 137 SCACYRNQRPVCGTDGK---TYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACHCDY 307
+C+C PVC +G TY+N+C+ CA + L + Y+G C A +C+
Sbjct: 24 TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCCS------ARYCNM 77
Query: 308 DLNQVCGSDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCT--CTRE 481
VC S+ Y + L + + +D + SCT C E
Sbjct: 78 FEQPVC-SEGQMYQTVCEFEER-------QCIEFKLFKNHIS-MDSSQEKCSCTAPCPTE 128
Query: 482 MKPVCGSDGITYNNDC-LLNCATINDSRLG----IEYYGPCAD 595
PVC G T+ N C LN + ++L ++Y G C +
Sbjct: 129 WNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVCCE 171
Score = 29.1 bits (62), Expect = 2.8
Identities = 40/175 (22%), Positives = 61/175 (34%), Gaps = 16/175 (9%)
Frame = +2
Query: 122 LAYPPSCA----CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFP 289
L Y SC C ++PVC ++G+ Y C + + L + S
Sbjct: 63 LLYEGSCCSARYCNMFEQPVC-SEGQMYQTVCEFEERQCIEFKLFKNHISMDSSQEKCSC 121
Query: 290 ACHCDYDLNQVCGSDNHTYDXXXXXXXXXX-----TNPGLSILYSGLCADEVKIVDGPSK 454
C + N VC T+ N L + YSG+C +++
Sbjct: 122 TAPCPTEWNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVCCEDM-------- 173
Query: 455 YPSCTCTREMKPVCGSDGITYNNDC---LLNCAT----INDSRLGIEYYGPCADK 598
C+ + VC S+G T+ + C + C I RL I GPC K
Sbjct: 174 ---CSAGQTSLTVCDSEGNTHTDICSFYIAKCRQMRRGIGKKRLQIAGVGPCKPK 225
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 398 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 553
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 398 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 553
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 398 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 553
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQN 58
>Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical
protein F53F8.4 protein.
Length = 253
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 128 YPPSCACYRNQRPVCG 175
Y PSCA Y RP CG
Sbjct: 32 YQPSCAAYSQPRPSCG 47
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 398 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 553
I + + A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAAILASSLLLVEGTSIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQN 58
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 524 RCCT*YRHCRRPASSRACTCTKGICWG 444
RCCT CR +R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 524 RCCT*YRHCRRPASSRACTCTKGICWG 444
RCCT CR +R CTC + C G
Sbjct: 97 RCCT---CCRTCCCTRCCTCCRPCCCG 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 524 RCCT*YRHCRRPASSRACTCTKGICWG 444
RCCT CR +R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 524 RCCT*YRHCRRPASSRACTCTKGICWG 444
RCCT CR +R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 524 RCCT*YRHCRRPASSRACTCTKGICWG 444
RCCT CR +R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 607 DYNLISARPVVFDAESGVIDCG 542
DY++I+ +PVV D SGVI G
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAG 23
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
protein C05C9.3 protein.
Length = 1225
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = -3
Query: 198 LLYVFPSV-------PHTGRWFL*HAQLGGYASVAITCVAASNIPILKYIVN*YIFLSPS 40
LLY FP + H +W + ++ ++ ++C+ +N+ I +I +I+ SPS
Sbjct: 188 LLYHFPQIILPCIGKKHFKKWDQYYWEVESMSTNTLSCICKNNMGIFMHIQEHFIYKSPS 247
Query: 39 LF 34
F
Sbjct: 248 GF 249
>U97001-6|AAB52257.2| 374|Caenorhabditis elegans Hypothetical
protein K08B12.1 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 396 LRPGFVAAAQFNRQALSYVWL 334
L P + AAQ+NRQA+ Y +L
Sbjct: 297 LNPAVLTAAQYNRQAMHYRYL 317
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 170 CGTDGKTYNNECLLD-C-ATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLNQVC 325
CG GK N +C+L+ C D G R G C + F H D N +C
Sbjct: 96 CGKHGKCVNGQCILNRCQGVSCDEGSMCR-DGKCEKVLETFCIGHADCGPNMLC 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,996
Number of Sequences: 27780
Number of extensions: 314934
Number of successful extensions: 764
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -