Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5i24
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    30   0.36 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   1.1  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    28   1.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.3  
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    26   5.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.8  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   7.7  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -2

Query: 334 LSVTASSATPGYLSIGHFANNSP--LVLSS-NFMTNSFPFDTNLMRPVHCGSCKFQSAA 167
           +SV  S   P Y+S+   A ++P  + L + N  +  FP+D  +  P  C +CKF+  A
Sbjct: 112 ISVLTSVLLP-YISLYIAAKSNPGKIDLKNWNEASRRFPYDYKIFFPNKCSTCKFEKPA 169


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 265  LVLSSNFMTNSFPFD-TNLMRPVHCGSCKFQSAALYPLLDVLGGILKTNTSFFTKITL 95
            L   +N+ T ++ F  T  + PV    C+      + L+DV     + ++SF+T   L
Sbjct: 1269 LTYDANYTTGAYVFKATGDLDPVILNMCQSHHVIFWDLIDVATTFARVDSSFYTSENL 1326


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 183 LQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKCPIDKYPGVALEAVTDSSRYFV 350
           LQ  +W  +++ +  GN  ++K  DKT  ++ +   + +  G  L+ + DS R+ V
Sbjct: 16  LQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL-DSERFIV 70


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 307 PGYLSIGH--FANNSPLVLSSNFMTNSFPFDTNLMRPVH 197
           P +L   H  F   +PL   SNF++N F  DT  ++  H
Sbjct: 170 PEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSH 208


>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 366 HLVFSQQNIVSYQLQLPVQLLDIYLLGTSQIIR 268
           HL+ S   + SY   +P+QLL      T Q+I+
Sbjct: 21  HLILSSLGVPSYSQTVPLQLLTFAHRYTQQLIQ 53


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +3

Query: 63   HYFL*TMDTYESVILVKNEVF--VFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNE 236
            H+    +  YE+   + NE+   +  I      R      W L+  ++  R   +  G  
Sbjct: 847  HWSKSAIKKYETKASIFNELLFCLVYISAGQPARAQEMVYWTLRNGKYKTRELYLMFGRL 906

Query: 237  LVMKLEDKTSGELFAKCPIDKYPGVALEAVTDSSRYFVV 353
            ++    DKT    FA+ PI ++    L  +  + RY+V+
Sbjct: 907  MIYSRYDKTRNMKFAEKPIPRFLSEPLSIL--ALRYYVL 943


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +3

Query: 63   HYFL*TMDTYESVILVKNEVF--VFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNE 236
            H+    +  YE+   + NE+   +  I      R      W L+  ++  R   +  G  
Sbjct: 847  HWSKSAIKKYETKASIFNELLFCLVYISAGQPARAQEMVYWTLRNGKYKTRELYLMFGRL 906

Query: 237  LVMKLEDKTSGELFAKCPIDKYPGVALEAVTDSSRYFVV 353
            ++    DKT    FA+ PI ++    L  +  + RY+V+
Sbjct: 907  MIYSRYDKTRNMKFAEKPIPRFLSEPLSIL--ALRYYVL 943


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 300 YPGVALEAVTDSSRYFVVKIQDDNGCAAYIGLGFGD 407
           +  V  EAV       + K++D   C A +G G  D
Sbjct: 711 FSDVYAEAVPSQKAEIIQKLKDQKHCVAMVGDGIND 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,744
Number of Sequences: 5004
Number of extensions: 57018
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)