Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5i24
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024748-2|AAF60412.1| 236|Caenorhabditis elegans Hypothetical ... 190 1e-48
AC024748-3|AAO38567.1| 69|Caenorhabditis elegans Hypothetical ... 77 2e-14
AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine re... 31 0.76
Z98866-21|CAD56612.1| 743|Caenorhabditis elegans Hypothetical p... 30 1.8
Z98866-20|CAB11567.1| 734|Caenorhabditis elegans Hypothetical p... 30 1.8
Z36948-3|CAA85412.1| 421|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 28 5.4
U58756-5|AAY44006.1| 288|Caenorhabditis elegans Hypothetical pr... 27 9.4
>AC024748-2|AAF60412.1| 236|Caenorhabditis elegans Hypothetical
protein Y110A2AR.3a protein.
Length = 236
Score = 190 bits (462), Expect = 1e-48
Identities = 90/166 (54%), Positives = 122/166 (73%), Gaps = 3/166 (1%)
Frame = +3
Query: 81 MDTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDK 260
M YE+V++VK +VFV++IPP G++AADWNL P WTGRMRLV+ G L M+LED
Sbjct: 1 MGDYENVLMVKPKVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLEDG 59
Query: 261 TSGELFAKCPIDKYPGVALEAVTDSSRYFVVKIQDDNGCAAYIGLGFGDRSDSFDLNVAL 440
+ +L+AKCPID +PG A+EAV+DSSRYFV+++Q+DNG A++G GF +R D+FD NV L
Sbjct: 60 ETCDLYAKCPIDAHPGNAIEAVSDSSRYFVIRLQNDNGQQAFVGCGFQERGDAFDFNVTL 119
Query: 441 QDHFKWLKKEQE---SDQTPQGQLDLGFKDGETIKINMKITKKDGS 569
QDHF+++++ E D + LDL FK+G+TI IN I KKD S
Sbjct: 120 QDHFRYIERSAELEKQDLSAGPSLDLAFKEGQTISIN--IGKKDKS 163
>AC024748-3|AAO38567.1| 69|Caenorhabditis elegans Hypothetical
protein Y110A2AR.3b protein.
Length = 69
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +3
Query: 81 MDTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLED 257
M YE+V++VK +VFV++IPP G++AADWNL P WTGRMRLV+ G L M+LED
Sbjct: 1 MGDYENVLMVKPKVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLED 58
>AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 3 protein.
Length = 341
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -1
Query: 176 ICCPVSSVRCSGWYFK-----NEYFVLH*NNTFISIHCL*KIML 60
+C P+S YF N VL NNTF+ IHCL +I+L
Sbjct: 32 MCIPISIYSLWRIYFSVKLHFNSKIVLFTNNTFVLIHCLARIVL 75
>Z98866-21|CAD56612.1| 743|Caenorhabditis elegans Hypothetical
protein Y49E10.23b protein.
Length = 743
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 351 VKIQDDNGCAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQTPQGQLDLGFKDGET 530
+K D G A + S N+ALQ K K EQ + + + ++GE
Sbjct: 110 LKTTTDRGLAQEAHFNVTTKEMSQKFNLALQQATK--KAEQCDKEKNEAVVKYAMREGEM 167
Query: 531 IKINMKITKKDGS 569
+K+ +I+KKD +
Sbjct: 168 MKLRDEISKKDSN 180
>Z98866-20|CAB11567.1| 734|Caenorhabditis elegans Hypothetical
protein Y49E10.23a protein.
Length = 734
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 351 VKIQDDNGCAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQTPQGQLDLGFKDGET 530
+K D G A + S N+ALQ K K EQ + + + ++GE
Sbjct: 110 LKTTTDRGLAQEAHFNVTTKEMSQKFNLALQQATK--KAEQCDKEKNEAVVKYAMREGEM 167
Query: 531 IKINMKITKKDGS 569
+K+ +I+KKD +
Sbjct: 168 MKLRDEISKKDSN 180
>Z36948-3|CAA85412.1| 421|Caenorhabditis elegans Hypothetical
protein D2089.5 protein.
Length = 421
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 336 SRYFVVKIQDDNGCAAYIGLGFGDRSDSFDLNVA-LQDHFKWLKKEQESDQTPQGQLDLG 512
+R+ V+++ DD G I G RS +D + +QD ++ +K E P+ L
Sbjct: 302 ARHKVIRLNDD-GKVNKIQFGNAMRSWFYDCEPSKVQDVYRAMKTFTEYCYQPRNMLKFR 360
Query: 513 FKDGETI 533
+DG+T+
Sbjct: 361 LEDGDTV 367
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
protein T16G12.1 protein.
Length = 1890
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 295 SIGHFAN-NSPLVLSSNFMTNSFPFDTNLMRPVHCGSCKFQSA 170
++ FAN S + S N P+ TNL + ++CG+ K+ A
Sbjct: 787 TLNMFANVKSACINSLNGTAWCNPYSTNLRKAIYCGAAKYAPA 829
>U58756-5|AAY44006.1| 288|Caenorhabditis elegans Hypothetical
protein F58F9.8 protein.
Length = 288
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 261 TSGELFAKCPIDKYPGVALEAVTDSSRYFVVKIQDDNGCAAYIGL-GFGDRSD 416
T+ E CP K V + + +S Y ++ + DD C AY L F D ++
Sbjct: 163 TTMETRTDCPCRKLVEVGEQVKSKNSYYPMIVVYDDPSCTAYQTLKAFNDAAN 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,879,652
Number of Sequences: 27780
Number of extensions: 326030
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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