Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5i15
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 132 3e-32
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 43 2e-05
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 0.70
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 1.6
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 2.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 3.7
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 4.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.6
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 25 8.6
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 132 bits (319), Expect = 3e-32
Identities = 68/123 (55%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Frame = +3
Query: 132 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNT 311
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD+ H+NT
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINT 77
Query: 312 PAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA 488
+ V G+ ++ L A+ ADVV+IPAGVPRKPGMTRDDLF TNASIVRD+A + +
Sbjct: 78 TSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETC 137
Query: 489 PKA 497
P+A
Sbjct: 138 PEA 140
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 43.2 bits (97), Expect = 2e-05
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Frame = +3
Query: 126 GAKNFSTTSQRN--FKXXXXXXXXX--IGQPLALLLKQNPLVTRLALYDI-APVTPGVAA 290
G+K FS S R+ FK +G A L + L + + D+ G A
Sbjct: 4 GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAM 63
Query: 291 DLSHMNTPAKVSGHKGPEELS--AAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDI 464
DL+H A H+ L KDA VVI AG +KPG TR DL N SI ++I
Sbjct: 64 DLNH----AAPLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEI 119
Query: 465 ALSIAQNAPKAIV 503
+ + AI+
Sbjct: 120 LREVTKYTKDAIL 132
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 0.70
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 482 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 387
L NG + D + SV V+TGH+R CW
Sbjct: 43 LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 110 PCCTKWCKELFHHITEEL*SGGRWCR 187
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 2.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 252 LYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAA 359
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 98 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 196
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 63 RVYTCIFELFPPDPPD 16
RV T + LFPPDP D
Sbjct: 199 RVKTALSALFPPDPKD 214
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 234 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAI 362
++ RLALY+ A V P + + + + + SG+ +E SA +
Sbjct: 586 IIGRLALYNPAHVMPSLRKTIIQLLSDMEYSGNSRQKEESAQL 628
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 179 WCRRWYRPAFGPSTEAESSGDQAGFIRHSACD 274
WC + +P F + S GD G R C+
Sbjct: 260 WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCE 291
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 333 KGPEELSAAIKDADVVVIPAGVP 401
K P+EL A +KD +PA VP
Sbjct: 205 KDPQELFAFVKDCAHTFLPAYVP 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,823
Number of Sequences: 5004
Number of extensions: 47371
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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