Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5i12
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0265 - 13638816-13641348,13641432-13641490 29 2.1
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455 28 6.4
08_02_1501 + 27568934-27569287,27569372-27569458 28 6.4
07_03_1120 + 24123822-24124318,24125877-24126006,24127334-241273... 28 6.4
06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652 28 6.4
01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409... 28 6.4
09_06_0345 + 22428356-22428547,22428920-22429363 27 8.5
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 27 8.5
07_01_1044 - 9104013-9104138,9104293-9104467,9105134-9105183,910... 27 8.5
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 27 8.5
02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687 27 8.5
>04_03_0265 - 13638816-13641348,13641432-13641490
Length = 863
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 38 SLWCSPLTTPRCSDIRSHWIATLLFTDYSVSVI*NNILS 154
+L CSPLT C ++RSH + L TD S + + IL+
Sbjct: 382 NLGCSPLTPISCQEMRSHQL--LALTDVSYFDVSHTILN 418
>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
Length = 378
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +3
Query: 378 LAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRVASMRARARDCPTYS 557
L +QQ ++ + +AAAAEL+ R A +V H+ RDR A A P Y
Sbjct: 263 LHLLQQQQAAASGSRAAAAELEQERRKAAELV--HMLHAVMLRDRAAD--AMPPPMPCYY 318
Query: 558 QP 563
P
Sbjct: 319 AP 320
>08_02_1501 + 27568934-27569287,27569372-27569458
Length = 146
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
H + G +R K R + + + SRA +QA EL+ RLL A C
Sbjct: 60 HQQQLGGGGGVERRKRRAMKNRESAERSRARKQAYLQELEQEVRLLRAENAALRHQCHQL 119
Query: 504 RDRVASMRARA 536
+ A A A
Sbjct: 120 KAAAAEAEAEA 130
>07_03_1120 +
24123822-24124318,24125877-24126006,24127334-24127379,
24128364-24128455,24128550-24128630,24128735-24128832,
24128972-24129053,24129166-24129258
Length = 372
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +3
Query: 339 RFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRVA 518
R+G VP+ E R AA++ + + E ++AA + V++A+ + E +R +
Sbjct: 75 RYGAVPEAEAGRAAAAVEAEAYAAVTESSSAAAAPASVEDGIEVLQAY--SKEVSRRLLE 132
Query: 519 SMRARARDCPTYSQP 563
++RA P + P
Sbjct: 133 LAKSRAAPSPAAAAP 147
>06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652
Length = 327
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 376 SSQRCNSRRRLVHTSKQLPLNLMTLLGCWREWCALISTRASSRVIASLPCEPELA 540
S++R S + K ++ +L W EW L+ S I P P+LA
Sbjct: 87 STKRMTSHMSAIVVVKSTVTSVALVLSLWGEWDGLVPREEYSSQIRDQPIWPKLA 141
>01_05_0633 +
23840427-23840562,23840699-23840768,23840846-23840951,
23841086-23841184,23841320-23841442,23841555-23842691
Length = 556
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 108 NRVAIQCERMSEHRGVVS-GEHQSDHCERVSRSRLEL 1
++ +IQ R VVS E +D CER SRSRL L
Sbjct: 509 SKSSIQQNTTPVERIVVSDSEDSADECERPSRSRLSL 545
>09_06_0345 + 22428356-22428547,22428920-22429363
Length = 211
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 451 LGCWREWCALISTRASSRVIASLPCEPELATVPPTRSLLWLAH 579
+GCWR C L S++ S ++ +LP P+ L + H
Sbjct: 150 VGCWRMDCRLRSSQISHHMMPTLPNYDTARRPQPSLQKLHVGH 192
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +1
Query: 400 RRLVHTSKQLPLNLMTLLGCWREWCALISTRASSRVIASLPCEPELATVPPTRSLLW 570
RRL+H+S++L L TL A + +SS V A LP L P SLLW
Sbjct: 4 RRLLHSSRRLGHRLQTLTPA---SAATAAAASSSPVSAPLPFRRPL----PASSLLW 53
>07_01_1044 -
9104013-9104138,9104293-9104467,9105134-9105183,
9105271-9105297,9107490-9107535,9107679-9107734,
9108070-9108365,9108471-9109947
Length = 750
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 372 RILAAMQQSSS-SRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRVASMRARARDCP 548
RIL + ++ ++AH + AA L +PRLL +V A + R A++RA
Sbjct: 7 RILRTLGSTAHLTQAHARLLAAGLAASPRLLPALVAAAF-SAHSPRYAAAALRAAGPAAS 65
Query: 549 TYSQPTL 569
T S TL
Sbjct: 66 TVSHNTL 72
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +3
Query: 360 REKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRVASMRARAR 539
R++A + ++ ++SS R QA+A L A+ A + C A+M AR +
Sbjct: 344 RQRASVSSSASEASSVRWERQASARR---RASLEAQAASAPPNKCG------AAMMARVQ 394
Query: 540 DCPTYSQPTLACP 578
CP+ + +CP
Sbjct: 395 RCPSQASAPASCP 407
>02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687
Length = 212
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 334 LCDSVVYPNARKRVSSQRCNSRRRLVHTSKQLPLNL 441
L ++V+ ++ +R+ ++RRRL HTS+ +P L
Sbjct: 142 LLEAVLDVSSTRRLQRFNAHARRRLKHTSRCMPARL 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,112
Number of Sequences: 37544
Number of extensions: 261753
Number of successful extensions: 901
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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