Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5i12
(590 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X72631-1|CAB53540.1| 614|Homo sapiens Rev-ErbAalpha protein pro... 40 0.009
M24898-1|AAA52335.1| 614|Homo sapiens triiodothyronine receptor... 40 0.009
BC056148-1|AAH56148.1| 614|Homo sapiens nuclear receptor subfam... 40 0.009
BC047875-1|AAH47875.1| 614|Homo sapiens nuclear receptor subfam... 40 0.009
L31785-1|AAA65937.1| 579|Homo sapiens orphan nuclear hormone re... 36 0.14
D16815-1|BAA20088.1| 579|Homo sapiens EAR-1r protein. 36 0.14
CR457434-1|CAG33715.1| 579|Homo sapiens NR1D2 protein. 36 0.14
BC070035-1|AAH70035.1| 408|Homo sapiens NR1D2 protein protein. 36 0.14
BC045613-1|AAH45613.1| 579|Homo sapiens nuclear receptor subfam... 36 0.14
AB209091-1|BAD92328.1| 549|Homo sapiens Orphan nuclear receptor... 36 0.14
L07592-1|AAA36469.1| 441|Homo sapiens peroxisome proliferator a... 33 0.57
BC007578-1|AAH07578.1| 361|Homo sapiens PPARD protein protein. 33 0.57
BC002715-1|AAH02715.1| 361|Homo sapiens PPARD protein protein. 33 0.57
AY919140-1|AAX14041.1| 441|Homo sapiens peroxisome proliferator... 33 0.57
AY442342-1|AAR05439.1| 441|Homo sapiens peroxisome proliferativ... 33 0.57
AL022721-9|CAD92505.1| 361|Homo sapiens peroxisome proliferativ... 33 0.57
AL022721-8|CAB38629.1| 441|Homo sapiens peroxisome proliferativ... 33 0.57
AF246303-1|AAF62553.1| 441|Homo sapiens peroxisome proliferativ... 33 0.57
AY358508-1|AAQ88872.1| 277|Homo sapiens DILV594 protein. 31 4.0
BC015202-1|AAH15202.2| 561|Homo sapiens CENPT protein protein. 30 7.0
BC007642-1|AAH07642.1| 558|Homo sapiens CENPT protein protein. 30 7.0
AK023173-1|BAB14445.1| 299|Homo sapiens protein ( Homo sapiens ... 30 7.0
>X72631-1|CAB53540.1| 614|Homo sapiens Rev-ErbAalpha protein
protein.
Length = 614
Score = 39.5 bits (88), Expect = 0.009
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAP 452
VRFGR+PKREK R+LA MQ + + ++ ++ L+ +P
Sbjct: 203 VRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSP 241
>M24898-1|AAA52335.1| 614|Homo sapiens triiodothyronine receptor
protein.
Length = 614
Score = 39.5 bits (88), Expect = 0.009
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAP 452
VRFGR+PKREK R+LA MQ + + ++ ++ L+ +P
Sbjct: 203 VRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSP 241
>BC056148-1|AAH56148.1| 614|Homo sapiens nuclear receptor subfamily
1, group D, member 1 protein.
Length = 614
Score = 39.5 bits (88), Expect = 0.009
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAP 452
VRFGR+PKREK R+LA MQ + + ++ ++ L+ +P
Sbjct: 203 VRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSP 241
>BC047875-1|AAH47875.1| 614|Homo sapiens nuclear receptor subfamily
1, group D, member 1 protein.
Length = 614
Score = 39.5 bits (88), Expect = 0.009
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAP 452
VRFGR+PKREK R+LA MQ + + ++ ++ L+ +P
Sbjct: 203 VRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSP 241
>L31785-1|AAA65937.1| 579|Homo sapiens orphan nuclear hormone
receptor BD73 protein.
Length = 579
Score = 35.5 bits (78), Expect = 0.14
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQ 422
VRFGR+PKREK R+L MQ + + + Q
Sbjct: 173 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ 201
>D16815-1|BAA20088.1| 579|Homo sapiens EAR-1r protein.
Length = 579
Score = 35.5 bits (78), Expect = 0.14
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQ 422
VRFGR+PKREK R+L MQ + + + Q
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ 202
>CR457434-1|CAG33715.1| 579|Homo sapiens NR1D2 protein.
Length = 579
Score = 35.5 bits (78), Expect = 0.14
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQ 422
VRFGR+PKREK R+L MQ + + + Q
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ 202
>BC070035-1|AAH70035.1| 408|Homo sapiens NR1D2 protein protein.
Length = 408
Score = 35.5 bits (78), Expect = 0.14
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQ 422
VRFGR+PKREK R+L MQ + + + Q
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ 202
>BC045613-1|AAH45613.1| 579|Homo sapiens nuclear receptor subfamily
1, group D, member 2 protein.
Length = 579
Score = 35.5 bits (78), Expect = 0.14
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQ 422
VRFGR+PKREK R+L MQ + + + Q
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ 202
>AB209091-1|BAD92328.1| 549|Homo sapiens Orphan nuclear receptor
NR1D2 variant protein.
Length = 549
Score = 35.5 bits (78), Expect = 0.14
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQ 422
VRFGR+PKREK R+L MQ + + + Q
Sbjct: 143 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ 171
>L07592-1|AAA36469.1| 441|Homo sapiens peroxisome proliferator
activated receptor protein.
Length = 441
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
HNA +RFGR+P+ EK +++A + + S+ + Q A D + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQVA-----DLKAFSKHIYNAYLKNFNMT 193
Query: 504 RDRVASM 524
+ + S+
Sbjct: 194 KKKARSI 200
>BC007578-1|AAH07578.1| 361|Homo sapiens PPARD protein protein.
Length = 361
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
HNA +RFGR+P+ EK +++A + + S+ + Q A D + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQVA-----DLKAFSKHIYNAYLKNFNMT 193
Query: 504 RDRVASM 524
+ + S+
Sbjct: 194 KKKARSI 200
>BC002715-1|AAH02715.1| 361|Homo sapiens PPARD protein protein.
Length = 361
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
HNA +RFGR+P+ EK +++A + + S+ + Q A D + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQVA-----DLKAFSKHIYNAYLKNFNMT 193
Query: 504 RDRVASM 524
+ + S+
Sbjct: 194 KKKARSI 200
>AY919140-1|AAX14041.1| 441|Homo sapiens peroxisome proliferator
activated receptor delta protein.
Length = 441
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
HNA +RFGR+P+ EK +++A + + S+ + Q A D + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQVA-----DLKAFSKHIYNAYLKNFNMT 193
Query: 504 RDRVASM 524
+ + S+
Sbjct: 194 KKKARSI 200
>AY442342-1|AAR05439.1| 441|Homo sapiens peroxisome proliferative
activated receptor, delta protein.
Length = 441
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
HNA +RFGR+P+ EK +++A + + S+ + Q A D + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQVA-----DLKAFSKHIYNAYLKNFNMT 193
Query: 504 RDRVASM 524
+ + S+
Sbjct: 194 KKKARSI 200
>AL022721-9|CAD92505.1| 361|Homo sapiens peroxisome proliferative
activated receptor, delta protein.
Length = 361
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
HNA +RFGR+P+ EK +++A + + S+ + Q A D + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQVA-----DLKAFSKHIYNAYLKNFNMT 193
Query: 504 RDRVASM 524
+ + S+
Sbjct: 194 KKKARSI 200
>AL022721-8|CAB38629.1| 441|Homo sapiens peroxisome proliferative
activated receptor, delta protein.
Length = 441
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
HNA +RFGR+P+ EK +++A + + S+ + Q A D + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQVA-----DLKAFSKHIYNAYLKNFNMT 193
Query: 504 RDRVASM 524
+ + S+
Sbjct: 194 KKKARSI 200
>AF246303-1|AAF62553.1| 441|Homo sapiens peroxisome proliferative
activated receptor delta protein.
Length = 441
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 324 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 503
HNA +RFGR+P+ EK +++A + + S+ + Q A D + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQVA-----DLKAFSKHIYNAYLKNFNMT 193
Query: 504 RDRVASM 524
+ + S+
Sbjct: 194 KKKARSI 200
>AY358508-1|AAQ88872.1| 277|Homo sapiens DILV594 protein.
Length = 277
Score = 30.7 bits (66), Expect = 4.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 427 LPLNLMTLLGCWREWC 474
LPL+LM LLGCW+ C
Sbjct: 17 LPLHLMALLGCWQPLC 32
>BC015202-1|AAH15202.2| 561|Homo sapiens CENPT protein protein.
Length = 561
Score = 29.9 bits (64), Expect = 7.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 545 TVASSGSHGSDAITRELARVEMSAHHSRQQPRSVIK 438
T+A SHG+ ++ R A ++ S H Q PR+++K
Sbjct: 57 TIARGRSHGARSVGRS-AHIQASGHLEEQTPRTLLK 91
>BC007642-1|AAH07642.1| 558|Homo sapiens CENPT protein protein.
Length = 558
Score = 29.9 bits (64), Expect = 7.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 545 TVASSGSHGSDAITRELARVEMSAHHSRQQPRSVIK 438
T+A SHG+ ++ R A ++ S H Q PR+++K
Sbjct: 54 TIARGRSHGARSVGRS-AHIQASGHLEEQTPRTLLK 88
>AK023173-1|BAB14445.1| 299|Homo sapiens protein ( Homo sapiens
cDNA FLJ13111 fis, clone NT2RP3002566. ).
Length = 299
Score = 29.9 bits (64), Expect = 7.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 545 TVASSGSHGSDAITRELARVEMSAHHSRQQPRSVIK 438
T+A SHG+ ++ R A ++ S H Q PR+++K
Sbjct: 57 TIARGRSHGARSVGRS-AHIQASGHLEEQTPRTLLK 91
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,407,946
Number of Sequences: 237096
Number of extensions: 1416058
Number of successful extensions: 3526
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3526
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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