Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5i12
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...   128   4e-32
AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced prot...    44   1e-06
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.18 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   0.97 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score =  128 bits (309), Expect = 4e-32
 Identities = 63/86 (73%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
 Frame = +3

Query: 336 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 515
           VRFGRVPKREKARILAAMQQSS SR+ E+A AAEL+D  RLLA VV+AHLDTC+FTRD+V
Sbjct: 138 VRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKV 197

Query: 516 ASMRARARDCPTYS--QPTLACPLNP 587
           A +  RAR+ P Y+   PTLACPLNP
Sbjct: 198 APILVRARETPNYTACPPTLACPLNP 223


>AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 21

 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +3

Query: 270 MGEDLPILKGILNGVVKYHNA 332
           MG++LPILKGILNGVV YHNA
Sbjct: 1   MGDELPILKGILNGVVNYHNA 21


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 490 RASSRVIASLPCEPELATVPPTRSL 564
           R+   V+ S  CEP++  V PTR L
Sbjct: 261 RSVDLVVTSTYCEPQVVIVSPTREL 285


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 174 SASINIVRITVTIISGHWL*T 236
           SA +++V +TV I +G WL T
Sbjct: 59  SAMLSLVVVTVAISTGEWLLT 79


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = +3

Query: 276 EDLPILKGILNGVVK-----YHNAPVRFG 347
           EDLP +K I   V+K     + + P RFG
Sbjct: 350 EDLPFIKDIYETVIKLEGASFRSKPYRFG 378


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = +3

Query: 276 EDLPILKGILNGVVK-----YHNAPVRFG 347
           EDLP +K I   V+K     + + P RFG
Sbjct: 56  EDLPFIKDIYETVIKLEGASFRSKPYRFG 84


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 14  ERETLSQ*SLWCSPLTTPRCSDIRSHWIATLLFTD 118
           E+  LS  +   SP+T+ + + +R+H  +T   T+
Sbjct: 319 EKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTN 353


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 218 WPLAVNLIFISN 253
           W LAVN++F+++
Sbjct: 8   WTLAVNVLFVNS 19


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 218 WPLAVNLIFISN 253
           W LAVN++F+++
Sbjct: 8   WTLAVNVLFVNS 19


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 218 WPLAVNLIFISN 253
           W LAVN++F+++
Sbjct: 8   WTLAVNVLFVNS 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,743
Number of Sequences: 438
Number of extensions: 2754
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)