Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5i07
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    31   0.092
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   2.6  

>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 31.5 bits (68), Expect = 0.092
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 139 ITELKQYILGKTSVSYFITYISHQEIGSYSNRRF 240
           +  LK Y+ G T++ +F+TY  +  IG +  + F
Sbjct: 211 MNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQGF 244


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 465 FTRGSPLLSIKSLYQLETVAIFVSYHQLYRTI*YHRKTG 349
           +TR S  L+  S+Y +  +A+ + Y    RTI   RKTG
Sbjct: 397 YTRDSSALAFLSMYVIVDMAVLLCY-AFVRTIQIIRKTG 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,151
Number of Sequences: 5004
Number of extensions: 39836
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)