Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5i07
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0899 + 32837027-32837215,32837366-32837547,32839056-328391...    30   1.5  
06_03_0219 - 18227559-18227858,18227864-18228340                       27   8.2  

>01_06_0899 +
           32837027-32837215,32837366-32837547,32839056-32839102,
           32839426-32839500,32839595-32839726,32839800-32839972,
           32840005-32840277,32840386-32840519,32840640-32840726,
           32840834-32840948
          Length = 468

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 519 THTARRSLAPNLWPIEKPF 575
           T T  RS+ PN WP+ KPF
Sbjct: 420 TMTGDRSVRPNSWPVPKPF 438


>06_03_0219 - 18227559-18227858,18227864-18228340
          Length = 258

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 489 RGQP*PRACATHTARRSLAPNLWPIEKP 572
           R +P P ACA  T RR  AP+  P   P
Sbjct: 73  RCRPPPAACAASTVRRPAAPSPPPASPP 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,679
Number of Sequences: 37544
Number of extensions: 254398
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)