Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5i07
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.41 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   2.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 485 SPWPTLAACVCYAYCAKELGPKLMANRK 568
           SP  T+A CVC   C +   P   +N K
Sbjct: 96  SPNSTIAVCVCMRKCPRRHRPVCASNGK 123


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = +2

Query: 404 MATVSSWYSDLMDSRGDPRVKDWPMMSSPWPTLAACVCYAYCAKE 538
           +AT +S  +      G   V    + +  WP      CY YC  E
Sbjct: 34  IATAASVVNACQTQTGVATVDIEAVRNGQWPETRQLKCYMYCLWE 78


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 123 NLTSKNNDYNICYLSNLQNYKQNF*NRI 40
           N  + NN+YN    +N  NYK+ + N I
Sbjct: 330 NNNNYNNNYNNYNNNNYNNYKKLYYNII 357


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 3   PYLGGWCRSGLK*FYFRNFVCSFVNLIDSIYCN 101
           PY G  C   +  ++  N  CS V   ++  CN
Sbjct: 64  PYSGSKCTWTITSYHRINLKCSLVEFSENKNCN 96


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 461 VKDWPMMSSPWPTLAACVCYAYCAKEL 541
           + DW  ++S WP L   +   + A EL
Sbjct: 430 LNDWYSLASSWPALVP-LALGFLAGEL 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,719
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)