Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h23
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.6  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   2.7  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   6.3  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   8.4  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   8.4  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   8.4  

>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 521 DDKDENEWVEFTDCLGRTRKMS 586
           ++  ENE VE TD  GRTR +S
Sbjct: 141 EEAPENETVEITDEFGRTRSVS 162


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 482 NKSGDEQVVANDNDDKDENEWVE 550
           NK  D  V+  D+DD+DE+E +E
Sbjct: 255 NKFADLSVLEEDDDDEDEDEELE 277


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 98  NMEDQ-GAKKILFNKSMLFSLKAELLRKQEEVLVKKQMPQHKAENFK 235
           NMED+    ++    ++L S      R   E+  +KQM Q + ENFK
Sbjct: 145 NMEDELRITRLASENNVLISRIDRTKRHFSELFTQKQMLQLQNENFK 191


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 365 QLFSPMPTLIFYLLVTPQR 309
           +LF+P+ TL FY+L+T  +
Sbjct: 65  KLFTPIETLTFYVLLTSSK 83


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 494 DEQVVANDNDDKDENE---WVEFTDCLGRTRKMS 586
           D   +ANDNDD ++++   W+    C+   +++S
Sbjct: 89  DPDFLANDNDDDNDSQDSSWINVRVCVNCRQQLS 122


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 538 ILIFVIIVICHNLFISRFIFY 476
           IL+F +++I   +FI+ F FY
Sbjct: 23  ILLFALVIILSVIFINFFFFY 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,026
Number of Sequences: 5004
Number of extensions: 32572
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)