Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h23
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0409 + 24992944-24993421,24993920-24994000,24994400-249946...    31   0.70 
04_04_1347 + 32803664-32803796,32803891-32804093,32804202-328043...    29   2.1  
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752...    29   3.7  
08_02_1615 + 28257275-28258428,28258523-28259144                       29   3.7  
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84...    28   4.9  
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835...    28   6.5  

>04_04_0409 +
           24992944-24993421,24993920-24994000,24994400-24994622,
           24994709-24994850,24995166-24995555
          Length = 437

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 376 TFNRQCWQFAASRKILGRFQYKK 444
           TF++ CW F  ++ IL RF+Y +
Sbjct: 315 TFDKYCWSFVNNKPILSRFRYPR 337


>04_04_1347 +
           32803664-32803796,32803891-32804093,32804202-32804383,
           32804514-32804798,32804901-32804959,32805052-32805088,
           32805186-32805257,32805336-32806005
          Length = 546

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 486 LFSTIVLVNSCCCCFFVLKSTKNLPAS 406
           +F  ++L+ SCCCCF   K     PA+
Sbjct: 131 VFGIVLLIISCCCCFCRKKYNTYSPAT 157


>12_01_0818 +
           7524549-7524747,7524855-7525863,7525964-7526108,
           7526206-7526295,7526404-7526553,7527333-7528094,
           7528177-7528496,7528581-7528707,7528792-7528959,
           7529054-7530466,7530563-7530823,7530983-7531144,
           7531976-7532121,7532601-7532667,7533483-7533587
          Length = 1707

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 482 NKSGDEQVVANDNDDKDENE-WVE 550
           NK  D  +VAN++D+ D N+ WV+
Sbjct: 280 NKDDDTDIVANNDDNSDNNDSWVQ 303


>08_02_1615 + 28257275-28258428,28258523-28259144
          Length = 591

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 548 RPTHSHLCHHCHLPQ 504
           +P HSHL HH H PQ
Sbjct: 32  QPPHSHLLHHHHSPQ 46


>02_01_0112 -
           839048-839552,839638-839720,839828-839982,840078-840557,
           840855-841097,841189-841403,841489-841756,842477-842525
          Length = 665

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 485 KSGDEQVVANDNDDKDENEWVEFTD 559
           K+G  +++AND  ++    WV FTD
Sbjct: 51  KNGHVEIIANDQGNRITPSWVAFTD 75


>11_06_0080 -
           19880319-19880957,19881800-19881948,19882266-19883589,
           19883766-19883953,19884034-19884499
          Length = 921

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 509 ANDNDDKDENEWVE 550
           +ND+DD DE+EW+E
Sbjct: 876 SNDDDDDDEDEWLE 889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,616
Number of Sequences: 37544
Number of extensions: 183911
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)