Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h23
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    29   2.5  
AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical ...    29   3.3  
AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.      27   7.7  
AC006708-13|AAF60415.1|  788|Caenorhabditis elegans Metaphase-to...    27   7.7  

>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/43 (25%), Positives = 31/43 (72%)
 Frame = +2

Query: 107 DQGAKKILFNKSMLFSLKAELLRKQEEVLVKKQMPQHKAENFK 235
           ++  +K+L  ++++ +LKA+ L++++E   K ++ Q +AE+++
Sbjct: 225 EEETEKVLQERTIVENLKAQFLKERKESTEKIELIQKEAEDYR 267


>AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical
           protein C53C7.1b protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 104 EDQGAKKILFNKSMLFSLKAELLRKQEEVLVKKQMPQHKAENFKP 238
           +DQ  K I FN ++   L   L  KQE +  +    ++ +EN+ P
Sbjct: 140 KDQALKMISFNSAISVGLSVPLFMKQELMQFRNYCGEYCSENWGP 184


>AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical
           protein C53C7.1a protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 104 EDQGAKKILFNKSMLFSLKAELLRKQEEVLVKKQMPQHKAENFKP 238
           +DQ  K I FN ++   L   L  KQE +  +    ++ +EN+ P
Sbjct: 140 KDQALKMISFNSAISVGLSVPLFMKQELMQFRNYCGEYCSENWGP 184


>AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 431 NLPRIFLLAANCQHCLLNVHKAQLFSPMPTLIFYLLVTPQRR 306
           N  R+   A   + CL+ + K +  SP    IF+LL    RR
Sbjct: 702 NRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRR 743


>AC006708-13|AAF60415.1|  788|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform a protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 431 NLPRIFLLAANCQHCLLNVHKAQLFSPMPTLIFYLLVTPQRR 306
           N  R+   A   + CL+ + K +  SP    IF+LL    RR
Sbjct: 702 NRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRR 743


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,935,047
Number of Sequences: 27780
Number of extensions: 182925
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)