Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h19
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 31 0.43
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 30 1.0
11_01_0076 - 600256-600897 27 7.1
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 27 7.1
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 27 7.1
12_01_0077 - 637470-638114 27 9.3
04_04_1031 - 30254665-30255794,30256181-30257036 27 9.3
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975... 27 9.3
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 27 9.3
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 31.5 bits (68), Expect = 0.43
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 77 ILVNVGTVVSLQNIISNQILFLFHSQRQRK*LSVPSYG 190
IL+ V +VSL +IS I F + +R+R+ LS+PS+G
Sbjct: 596 ILIPVACLVSLAMVIS--IFFTWRGKRKRESLSLPSFG 631
>04_04_1624 - 34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 339 CQPTPAAEALVIARGIRFPCNTIGLD-GAVRLSGA 238
C P PAA+ + + I F C G+D GA+R G+
Sbjct: 1079 CVPKPAADEVALQVNIDFVCGQGGIDCGAIRAGGS 1113
>11_01_0076 - 600256-600897
Length = 213
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 200 GSVRVPLES*AGHAPLNLTAPSRPIVLHGKRMPRAITRASAAGVGWQQLHHDVRDDGICV 379
GS+R+ GH LN+ +PS + + +P + + S AGVG VR+D V
Sbjct: 14 GSIRLTSPRITGHRHLNVRSPSAAAAVLFRNIP-SPPQHSLAGVG-VSASAPVRNDAHVV 71
Query: 380 SYVYDAPATQPD 415
S D + D
Sbjct: 72 SPASDVTQSGAD 83
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 234 AMRRLISLLRQGQSYCTESECLEQLPGLPQPE 329
A R +S+ Q SYC + +Q+P P PE
Sbjct: 5 AAARAVSVAFQDASYCLDGGKAKQVPHAPSPE 36
>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 465 EHRHGREDCALVWPHLGSGCVAGASYT*LTQMPSSRTS 352
+H H DC V L SGC +G+ Y+ RTS
Sbjct: 1476 QHGHNNLDCTSVPNFLPSGCSSGSVYSRRFDAMRKRTS 1513
>12_01_0077 - 637470-638114
Length = 214
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 200 GSVRVPLES*AGHAPLNLTAPSRPIVLHGKRMPRAITRASAAGVGWQQLHHDVRDDGICV 379
GS+R+ GH LN+ +PS + + +P + + S AGVG VR+D V
Sbjct: 14 GSIRLTSPRITGHRHLNVRSPSAAAAVLFRNIP-SPPQHSLAGVG-VSASAPVRNDAHVV 71
Query: 380 SYVYDAPATQPD 415
S D + D
Sbjct: 72 SPASDVTQSVGD 83
>04_04_1031 - 30254665-30255794,30256181-30257036
Length = 661
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 214 ASGIMSWPCAA*SHCSVKANRIARKANASSNYQG 315
A+ MS+ C S+C +N I + N S +QG
Sbjct: 241 ANRFMSYACKENSYCYNSSNGIGYRCNCSLGFQG 274
>02_02_0491 -
10896463-10897172,10897246-10897353,10897457-10897558,
10897674-10897772,10898995-10899093,10900622-10900943
Length = 479
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 411 QIQDAAKPAH-NPHDRDGAPPTPPRI*STLA 500
Q DAA P NP R APPTPP S+LA
Sbjct: 213 QFTDAAYPVDWNP--RSVAPPTPPAALSSLA 241
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 337 PADSGCGSPGNCSRHSLSVQYDWP*RSSEIKRRMASS*FQRHSH 206
P + SP + S S S RSS KRR ASS +RH H
Sbjct: 33 PDSASSPSPSSASSPSRSPDRRSRSRSSGSKRRKASSSSRRHRH 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,761,283
Number of Sequences: 37544
Number of extensions: 302934
Number of successful extensions: 933
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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