Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h17
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces po... 59 5e-10
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.11
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 29 0.59
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 28 1.0
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.4
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 1.8
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.4
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 3.2
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 4.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.5
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 25 5.5
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 7.3
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 9.6
>SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 58.8 bits (136), Expect = 5e-10
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 301 VCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRP-NVGQ 477
V FD+DST+IQ E IDELA G EV +T+ AM G + FQE+L++R+ +++ +V
Sbjct: 79 VVFDMDSTLIQQECIDELAAEAGIQKEVATITSLAMNGEIDFQESLRRRVSLLQGLSVDV 138
Query: 478 IREFIEKFPVRLTPGITEL 534
I + I K + TPG +L
Sbjct: 139 INKVIGK--ITFTPGAKQL 155
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.11
Identities = 31/106 (29%), Positives = 54/106 (50%)
Frame = -3
Query: 545 NSFTNSVIPGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFP 366
+S T+S P VS T + + +S PT S L + + P +S+ S LTSS
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAA-PT-STSSSYLSSSSVVSSSSSPSSSSSSTLTSS--- 233
Query: 365 QNLASSSMPSSCMTVESTSKQTQSAVLNNSWTVCWGDITLIDTSES 228
+L++SS+PS+ + STS S+ +++ + ++I +S S
Sbjct: 234 -SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
Score = 25.8 bits (54), Expect = 4.2
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = -3
Query: 545 NSFTNSVIPGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVS-LLTSSPF 369
+S + S IP S + + + +SL + SS +S ++I +S+ S TSS
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSS--SSSSSIISSSSSSSSSPTSTSSTI 290
Query: 368 PQNLASSSMPSSCMTVESTSKQTQSA 291
+ +SSS P+S + S+S + S+
Sbjct: 291 SSSSSSSSSPTSTSSTISSSSSSSSS 316
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 419 ILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTV 267
+L I A++LLT P +S+ SC +S K ++ +LN T+
Sbjct: 334 LLMEITKAIALLTQLKVPAPTFKTSVSISCSNFDSQIKYLENVLLNALGTI 384
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = -3
Query: 377 SPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTVCWGDITLIDTSESVFNVAYCRLL 198
S P++L+SS +P T++ST ++ T + I L S A ++
Sbjct: 266 SKIPEDLSSSLLPLELNTLQSTPTSVSVGSASSQGTHEYSIINLTSNHSSFSLKALKKIA 325
Query: 197 FKL*RAISVASSPSNE 150
L +SVA +NE
Sbjct: 326 HNLLPPVSVAERYANE 341
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.0
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = -3
Query: 515 VSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPS 336
+S +G S S+ +G SS +F S + P +S+ S +SSP + SSS
Sbjct: 121 LSYSGTISSTSIAPSMIGTRTSSSYFITS-SSSTP--SSSSSSSSSSPSSSSSKSSSSSK 177
Query: 335 SCMTVESTSKQTQSA 291
S + S+SK + S+
Sbjct: 178 SSSSSSSSSKSSSSS 192
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 383 TSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNS 276
+S+P + +SSS PSS + S+S ++ S+ ++S
Sbjct: 151 SSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSS 186
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.4
Identities = 23/118 (19%), Positives = 53/118 (44%)
Frame = -3
Query: 473 PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQS 294
P+ ++ S + S + +P +S+ + + ++SSS+PS+ +V S + S
Sbjct: 526 PSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTS 585
Query: 293 AVLNNSWTVCWGDITLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 120
+ + S ++ + +S S + + I + +PS ++MI +SI+
Sbjct: 586 SPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSII 643
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 416 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWT 270
LP + AVS +SS P + S+S +S S+ K T S SWT
Sbjct: 196 LPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSSLKKFYSWT 244
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = -3
Query: 470 TLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 291
T+ + S+ + S N PI + SL S FP + SSS S ++ T+ QS+
Sbjct: 507 TVSVPSSTQSYSTSSN-FTTPITISTSL---SSFPTTIVSSSFQYSSLSSNVTTTNAQSS 562
Query: 290 VLNNS 276
L++S
Sbjct: 563 SLSSS 567
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 3.2
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = -3
Query: 521 PGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSM 342
PG S+ N + +SSL K + + + ++ +L TSS N S +
Sbjct: 79 PGFSMNYNARTGAFTGGPNAAGLSSLGGKYNTSSTTTTLTTSTTLNTSSGTTLNSTSKTT 138
Query: 341 PSSCMTVESTSKQTQSAVLNNSWT-VCWGDITLIDTSESVFNVAYCRLLF 195
SS + V+ ++ S WT + G I L + S +F ++ L+
Sbjct: 139 TSS-VAVDDQKSKSDSKKERRDWTCLDLGGIGLRNVSTDLFKFSFLTELY 187
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -3
Query: 428 WNVILPPIASAVSLLTSSPF--PQN 360
WN++LP + +A+ ++ F PQN
Sbjct: 445 WNLVLPSVGAAIKIVVHGQFEEPQN 469
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 5.5
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = -3
Query: 536 TNSVIPGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNL 357
T++ IP G+ S+++ I PT+ +S S ++ +PP +++ + SSP P
Sbjct: 174 TSTSIPPTG--GSSSLSTPITPTVPPTSTS-----STSIPIPPTSTSSTDTNSSPLPTTS 226
Query: 356 ASSSMPSSCMTVESTSKQT 300
S + +S T S+S T
Sbjct: 227 TSCTTSTSIPTGGSSSLST 245
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 5.5
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 133 NSIIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVQEL 282
+SI VSL+G+ TE+AL + + A + V +++M+P QTV L
Sbjct: 144 SSIGYVSLVGKPKTEIALLAKILQDKGAIFYVKTTVPMAMMAP-QTVSNL 192
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 386 LTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSW 273
L + FP AS S+P M E TS++T S N +
Sbjct: 144 LARAAFPDQEASISIPWYIMVSECTSEETISFFKENDF 181
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 9.6
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 467 LGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMP----SSCMTVESTSKQT 300
LG +++ NV P + S P P N + MP +S ++ ST+ Q+
Sbjct: 422 LGTKLNAKAISFKPNVAAPVFTPGKFTIPSKPAPVNASRPMMPQQSNNSEASIPSTTPQS 481
Query: 299 QSAVLN 282
S V N
Sbjct: 482 PSVVSN 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,269
Number of Sequences: 5004
Number of extensions: 41940
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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