Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h17
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015... 105 3e-23
12_02_0452 - 19188601-19188726,19189364-19189417,19189493-191896... 52 3e-07
01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369 36 0.021
01_05_0314 - 20779862-20780286,20780734-20781286 33 0.11
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 32 0.34
05_07_0323 + 29260608-29260836,29262242-29262513,29263349-292634... 32 0.34
12_01_0090 + 717524-719080 30 1.0
03_06_0421 - 33797836-33797992,33798450-33798549,33798646-337987... 29 1.8
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 29 2.4
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 28 4.2
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 28 5.6
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 28 5.6
12_01_0374 - 2910752-2911516 27 7.4
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627... 27 9.8
>11_06_0457 -
23800451-23800576,23801259-23801312,23801390-23801539,
23801919-23802012,23802460-23802567,23802661-23802793,
23802903-23803139,23803488-23803586,23804968-23804983
Length = 338
Score = 105 bits (251), Expect = 3e-23
Identities = 50/96 (52%), Positives = 66/96 (68%)
Frame = +1
Query: 259 PQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEAL 438
P + V E + AD VCFDVDSTV DEGIDELA FCG G V TA+AM G + F+EAL
Sbjct: 115 PSKGVLETWCNADAVCFDVDSTVCLDEGIDELADFCGAGKAVAEWTAKAMTGTVPFEEAL 174
Query: 439 KKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKEL 546
RL +I+P + Q+ + + K P R++PGI +L+K+L
Sbjct: 175 AARLSLIKPYLSQVDDCLVKRPPRISPGIADLIKKL 210
>12_02_0452 -
19188601-19188726,19189364-19189417,19189493-19189642,
19189994-19190087,19190607-19190710
Length = 175
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +1
Query: 406 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKEL 546
M G++ F++AL RL + +P++GQ+ + +EK P R++PGI ELVK L
Sbjct: 1 MTGSVPFEKALAARLSLFKPSLGQVEDCMEKRPPRISPGIAELVKML 47
>01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369
Length = 672
Score = 35.9 bits (79), Expect = 0.021
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 187 YSLKSNLQYATLKTLSLVSISVMSPQ-QTVQELFRTADCVCFDVDSTVIQDEGIDELAKF 363
Y L N Q T LV +SP Q +++ R AD + +T++QDE + +K
Sbjct: 531 YCLVHNSQCTVKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQDEIWENGSKV 590
Query: 364 CGKGDEVKRLTAEAMGGNMTFQE 432
K V L A GN T QE
Sbjct: 591 IEKASGVHALLRIAEAGNSTSQE 613
>01_05_0314 - 20779862-20780286,20780734-20781286
Length = 325
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = -2
Query: 465 RPDDVQSLLQGFLECHIAAHCFRRQSFNLVSFPAELGQFIDAFILYDGRVYIEANAVRCP 286
+P D++ L + +L H+ A +R S N++ +++D F+ R E
Sbjct: 166 KPKDLKELKEQYLLAHLVAGHWRMAS-NIL-------EYVDNFLFQSLREKDEEEVRIAM 217
Query: 285 EQLLDSLLGRHHADRHQ*ERLQRRVLQVA 199
++L D L +HH +H R+ +L +A
Sbjct: 218 QRLQDDLQKKHHGSQHSVRRIAHELLGIA 246
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 31.9 bits (69), Expect = 0.34
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -3
Query: 422 VILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA-VLNNS 276
V+ PP +S + + SSP +N + SMPSS T ES S T +A VL+ S
Sbjct: 486 VLAPPSSS--NAVESSPKIENSGTKSMPSSQHTSESDSATTSAAQVLDKS 533
>05_07_0323 +
29260608-29260836,29262242-29262513,29263349-29263487,
29263581-29263714,29263847-29263970,29264364-29264773
Length = 435
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -3
Query: 356 ASSSMPSSCMTVESTSKQTQSAVLNNSWTVCWGDITLIDTSESV 225
A S+P+ ES+S++T++A ++S CWG + L+ +S +
Sbjct: 3 AGRSVPARGRDSESSSRKTKAAASSSSTAGCWGRLPLLISSGGI 46
>12_01_0090 + 717524-719080
Length = 518
Score = 30.3 bits (65), Expect = 1.0
Identities = 28/79 (35%), Positives = 41/79 (51%)
Frame = -3
Query: 521 PGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSM 342
P S G +++L+ LGL+ S F A + LPP SA+SLL +P P L S S+
Sbjct: 13 PRRSAAGGHQLHALL-AKLGLLHRSEFLSALLSR-LPPSPSALSLLLEAP-PAVL-SPSL 68
Query: 341 PSSCMTVESTSKQTQSAVL 285
+ S+S+ SA+L
Sbjct: 69 VCPVIVAFSSSQAPSSALL 87
>03_06_0421 -
33797836-33797992,33798450-33798549,33798646-33798700,
33798965-33799085,33799759-33799856,33800004-33800105,
33800196-33800360,33800441-33800522,33800960-33801117,
33801214-33801339,33801533-33801616,33802011-33802100,
33802188-33802258,33803420-33803513,33803585-33803671,
33804258-33804306,33805450-33805538,33805691-33805756,
33806009-33806071,33806174-33806282,33806376-33806446,
33807212-33807298,33807390-33807535,33808848-33808953,
33809429-33809494,33809672-33809741,33810839-33811206
Length = 959
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 229 LSLVSISVMSPQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKR 390
+ ++S+ + +P+ T+QEL F T++ ++GI E K G+G V R
Sbjct: 268 VDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYK-TGRGRVVMR 320
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3
Query: 413 PPIASAVSLLTSSPFPQ-NLASSSMPSSCMTV-ESTSKQTQSAVLNNSWTVCW 261
PPI+S++SL+ S+P P +A P + S+S + S+ + S + W
Sbjct: 4 PPISSSLSLMASNPIPSPPVAKPGRPLTVAACSNSSSSSSSSSPSSTSCSAAW 56
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -3
Query: 455 MSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 291
+SS F S L ++S +L +PF ++A S+ PSS T ST QT S+
Sbjct: 182 ISSNNFSGSLPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPT-GSTPTQTPSS 235
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -3
Query: 470 TLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSS-----CMTVESTSK 306
+LG +M+SL K S +LPP+ S + ++PF NL S+ + ++ C T+ S
Sbjct: 319 SLGELMNSL--KVS---VLPPLGSMIITSIAAPFADNLISNGVDTTKVRKICQTIAFLSP 373
Query: 305 QT 300
T
Sbjct: 374 AT 375
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -2
Query: 495 LNEFSDLTDVRPDDVQSLLQGFLECHIAAHCFRRQSFNLVSFPAELGQFIDAFILYDGRV 316
LN FS D P+ +S Q L+ A S ++V F + G+ + ++YDGRV
Sbjct: 349 LNNFSSHPDGSPEISKSNFQVELDAAKATWL----SNDIVMFSTKAGEMLLLTVVYDGRV 404
Query: 315 YIEANAVRCPEQLLDS 268
+ ++ +L S
Sbjct: 405 VQRLDLMKSKASVLSS 420
>12_01_0374 - 2910752-2911516
Length = 254
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 425 NVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 291
+ + PP+ + S +SS FP + +++S SS +T+ + SA
Sbjct: 58 SALKPPVPRSTSSHSSSFFPSSASTASFSSSSAATYTTTYSSSSA 102
>09_02_0250 +
6266818-6267029,6267230-6267287,6267999-6268118,
6272359-6272511,6273381-6273586,6274280-6274733,
6276573-6276610,6276923-6277046,6277184-6277246,
6277350-6277412,6277526-6278152,6278267-6278294,
6278373-6278413,6278689-6278851,6278987-6279039,
6279217-6279262,6279373-6279444,6279578-6279741,
6279968-6280099,6280249-6280565,6280721-6280892,
6281009-6281107,6281275-6281349,6281446-6281504,
6281647-6281836,6281982-6282020
Length = 1255
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/84 (22%), Positives = 37/84 (44%)
Frame = +1
Query: 70 YYTRNLYER*VIPQSVNKIEVNSIIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSIS 249
Y LY + ++ K++ NS +++ + + L S+ + K S V
Sbjct: 467 YVMLELYRKTIVQSMKRKMKKNSNVLLENQ-KMKKQTCLTKANSSFSRFSAKYFSEVIAD 525
Query: 250 VMSPQQTVQELFRTADCVCFDVDS 321
+ PQ+ + E + A+ + FDV S
Sbjct: 526 LSGPQRFIIEKYGFANLLLFDVKS 549
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,017,260
Number of Sequences: 37544
Number of extensions: 276491
Number of successful extensions: 885
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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