Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h17
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-10|CAB60607.2| 279|Caenorhabditis elegans Hypothetical... 100 1e-21
AL132865-9|CAB60608.2| 276|Caenorhabditis elegans Hypothetical ... 100 1e-21
AL132865-18|CAJ76950.1| 282|Caenorhabditis elegans Hypothetical... 94 5e-20
AL132865-11|CAC42380.2| 265|Caenorhabditis elegans Hypothetical... 94 5e-20
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 31 0.41
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.9
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 28 3.8
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 28 5.0
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 28 5.0
AF036704-4|ABA00184.1| 352|Caenorhabditis elegans Hypothetical ... 28 5.0
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 27 6.7
U10401-5|AAA19060.1| 238|Caenorhabditis elegans Hypothetical pr... 27 8.8
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 27 8.8
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 27 8.8
>AL132865-10|CAB60607.2| 279|Caenorhabditis elegans Hypothetical
protein Y62E10A.13b protein.
Length = 279
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/95 (49%), Positives = 64/95 (67%)
Frame = +1
Query: 262 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALK 441
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F++AL
Sbjct: 46 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRDALA 105
Query: 442 KRLDIIRPNVGQIREFIEKFPVRLTPGITELVKEL 546
RL +++PN Q+ +F+ +LT GI ELV L
Sbjct: 106 ARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRL 140
>AL132865-9|CAB60608.2| 276|Caenorhabditis elegans Hypothetical
protein Y62E10A.13a protein.
Length = 276
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/95 (49%), Positives = 64/95 (67%)
Frame = +1
Query: 262 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALK 441
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F++AL
Sbjct: 43 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRDALA 102
Query: 442 KRLDIIRPNVGQIREFIEKFPVRLTPGITELVKEL 546
RL +++PN Q+ +F+ +LT GI ELV L
Sbjct: 103 ARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRL 137
>AL132865-18|CAJ76950.1| 282|Caenorhabditis elegans Hypothetical
protein Y62E10A.13d protein.
Length = 282
Score = 94.3 bits (224), Expect = 5e-20
Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Frame = +1
Query: 262 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTF--QEA 435
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F ++A
Sbjct: 47 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRYRDA 106
Query: 436 LKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKEL 546
L RL +++PN Q+ +F+ +LT GI ELV L
Sbjct: 107 LAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRL 143
>AL132865-11|CAC42380.2| 265|Caenorhabditis elegans Hypothetical
protein Y62E10A.13c protein.
Length = 265
Score = 94.3 bits (224), Expect = 5e-20
Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Frame = +1
Query: 262 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTF--QEA 435
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F ++A
Sbjct: 30 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRYRDA 89
Query: 436 LKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKEL 546
L RL +++PN Q+ +F+ +LT GI ELV L
Sbjct: 90 LAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRL 126
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = -2
Query: 171 CFFSE*RNYYDRIHFNLIY*LRYYLSFVKVTSVIMKDPLCGKYDEHASVEC 19
C+++E NY++ N + Y+ SF + + I+++ L GK+++ + C
Sbjct: 1502 CYWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVGKFEKLTIINC 1552
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 416 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 288
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 482 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 524
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 416 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 288
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 689 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 731
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 416 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 288
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 689 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 731
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -3
Query: 401 SAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWT 270
S V+ T+SP ASS+ PSS T+ STS T + ++ S T
Sbjct: 1500 STVASSTASP----AASSTAPSSTGTMSSTSSGTVGSTISESST 1539
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 376 DEVKRLTAEAMGGNMTFQEALKKRLDIIRPN 468
D+VK +T E M GNM + RLD+ P+
Sbjct: 385 DDVKMITGEEMKGNMADFSDILTRLDLAPPS 415
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 380 SSPFPQNLASSS-MPSSCMTVESTSKQTQSAVLNNS 276
SSP L++SS +PS T +S Q QS V NNS
Sbjct: 831 SSPSSTRLSNSSNIPSCFATPDSPDSQLQSFVSNNS 866
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 380 SSPFPQNLASSS-MPSSCMTVESTSKQTQSAVLNNS 276
SSP L++SS +PS T +S Q QS V NNS
Sbjct: 831 SSPSSTRLSNSSNIPSCFATPDSPDSQLQSFVSNNS 866
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 313 VDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIRE 486
+D+ + E L K KG+E+ R AEA G ++ +KKR++ + + GQIR+
Sbjct: 1766 IDTELASHEPQVSLVKL--KGEELLRSAAEAGVG----EDQIKKRMEDLEQSWGQIRD 1817
>AF036704-4|ABA00184.1| 352|Caenorhabditis elegans Hypothetical
protein ZK185.5 protein.
Length = 352
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 PQSVNKIEVNSIIIVSLL-GEEATEMALYSLKSNLQYATLKTLSLVSISVM 255
P+ N++E+ +II S+L G T + + S++S L+ +++ +IS+M
Sbjct: 134 PRGRNRLELVGVIICSILMGISNTLLVMESIRSILEGDINPVMNITTISIM 184
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 291 CPEQLLDSLLGRHHADRHQ*ERLQRRVLQVAFQTVKSHLC 172
CP D R +H RL+R +L A KSHLC
Sbjct: 5041 CPVAGCDCRCQRSKQTKHLKARLRRHMLLSANMRAKSHLC 5080
>U10401-5|AAA19060.1| 238|Caenorhabditis elegans Hypothetical
protein T20B12.7 protein.
Length = 238
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +1
Query: 250 VMSPQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQ 429
V+ +EL R AD + DV+ +IQ + + LA+ C +V + E + +
Sbjct: 34 VVGSVSNAREL-RGADSLVGDVERAIIQVQETELLAEVCNTVFDVMKQNGEVIVFSQDLT 92
Query: 430 EALKKRLDIIRPNVGQIREFIEKFPVR 510
A +K +R ++ E +FPVR
Sbjct: 93 TAQRK----LRIAGFRVTEVAAEFPVR 115
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 545 NSFTNSVIPGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWN 423
NSF N+ G N + I + L+++S++FKA W+
Sbjct: 128 NSFVNTATNGK--IKNIATQDSIKDAIALLINSIYFKADWD 166
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 545 NSFTNSVIPGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWN 423
NSF N+ G N + I + L+++S++FKA W+
Sbjct: 128 NSFVNTATNGK--IKNIATQDSIKDAIALLINSIYFKADWD 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,956,312
Number of Sequences: 27780
Number of extensions: 234029
Number of successful extensions: 921
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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