Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h17
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.16 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 20  HSTEACSSYFPQSGSFIITLVTFTKDK*Y 106
           H    CS  F QSG  +I + T T +K Y
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHTGEKPY 204


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 447 SLLQGFLECHIAAHCFRRQSFNLVSFPAELGQFIDAFILYDGRVYIEANAVR 292
           SLL   L C  + HC  R SF      A     ++A     G   ++  AVR
Sbjct: 8   SLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQTGVATVDIEAVR 59


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 288 PEQLLDSLLGRHHADRHQ*ERLQRR 214
           P  L +SLL RH+ D  +   L+ R
Sbjct: 636 PPTLTESLLNRHNEDMEKLMMLKHR 660


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 393 QSFNLVSFPAE-LGQFIDAFIL 331
           QS  L+SFP E L + +  FIL
Sbjct: 91  QSITLISFPGELLMRLLKMFIL 112


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 413 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQ 303
           P IASA S  TSS  P   A+++   S      T+KQ
Sbjct: 515 PRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQ 551


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 16  ITFDGGVFVVFPAKWVFHYYTR 81
           I  +G   ++ PAK + HY TR
Sbjct: 780 ILINGVWMIIDPAKAMHHYPTR 801


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,445
Number of Sequences: 438
Number of extensions: 2740
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)