Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h14
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   1.1  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   3.4  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   4.5  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   5.9  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   7.9  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 97  EVLFLSVLYLKIVNVYHFLN 38
           + +FLS++Y  ++NVY F N
Sbjct: 695 QYIFLSIMYTNVLNVYAFCN 714


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 139 DDIK*IFELLTHKNTIFNKVLKKNIAYLILSYN 237
           +D K +FE+  + NTI   +L   I Y +LS N
Sbjct: 121 NDPKKVFEIALNGNTILGGILVAYILYNVLSPN 153


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -2

Query: 382 YFYNINNNKWLHYFDYN-----NIFFVLVMSH 302
           + + I N KW++  DYN      I FVLVM H
Sbjct: 98  HLFFILNYKWIYRKDYNLCLNQKIAFVLVMLH 129


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 151 ILYHLHRLRSSVIAACDTEVLFLSV 77
           I +HL RLR+S ++  D   +FL++
Sbjct: 514 IQFHLDRLRNSSLSTTDAAEIFLAL 538


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 466 RLLGLLISYFRYRKKYN*SVHSINLTGDYFYNINNNKWLHYFDYNNIFFVLVMSHAICNS 287
           R++ LLI  F +++ Y+ S + +N+T            L+Y    N+  V     A C+ 
Sbjct: 237 RVMKLLIGDFTFQEAYDRSGYILNVTVSCGSLFEMPSLLNYITAPNV-LVWSAVVATCSV 295

Query: 286 PILF 275
           P LF
Sbjct: 296 PFLF 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,553
Number of Sequences: 5004
Number of extensions: 35523
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)