Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h14
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364...    28   3.4  
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420           28   3.4  
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805...    27   5.9  

>04_03_0548 -
           17035394-17035749,17035761-17036295,17036325-17036458,
           17037053-17037134
          Length = 368

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 320 CPCHVPRHLQQSH 282
           C CH  RHLQQ+H
Sbjct: 311 CKCHAQRHLQQAH 323


>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
          Length = 1407

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 109 ACDTEVLFLSVLYLKIVNVYHFLNEIIE*KLSLFF 5
           A ++  L LS++    +N+YHFL   ++ +L  FF
Sbjct: 338 ATESSPLVLSMICSTALNLYHFLRRFLKLQLEAFF 372


>04_04_1401 +
           33279092-33279286,33280223-33280306,33280459-33280524,
           33280945-33281028,33281181-33281246,33281719-33281802,
           33281955-33282020,33282323-33282388,33282667-33282726,
           33282805-33282888,33282968-33283111,33283552-33283586,
           33283694-33283746,33283828-33283928,33284516-33284974
          Length = 548

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 215 AMFFFNTLLNIVFL*VSNSNIYFISSTQITEFSHSCLRYGSLVSLCFISENRK 57
           A+  F  L+N++   V+   +Y I  T IT+ S   LR+ + + +C   ++ K
Sbjct: 331 ALSAFEQLINLIEKGVAVEQLYQIDETDITKNSLRFLRFLTEIEICTHEDHYK 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,178
Number of Sequences: 37544
Number of extensions: 163006
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)