Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h14
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU052683-1|ABU48856.1|  249|Caenorhabditis elegans heparan sulfa...    29   1.3  
EU052682-1|ABU48855.1|  278|Caenorhabditis elegans heparan sulfa...    29   1.3  
AF098987-1|AAC67432.1|  276|Caenorhabditis elegans Heparan sulph...    29   1.3  
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    27   9.2  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   9.2  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   9.2  

>EU052683-1|ABU48856.1|  249|Caenorhabditis elegans heparan sulfate
           3-O sulfotransferaseisoform b protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 376 YNINNNKWLHYFDYNNIFFV 317
           Y+++ +KWL YFD  N  FV
Sbjct: 196 YDVHISKWLKYFDLKNFLFV 215


>EU052682-1|ABU48855.1|  278|Caenorhabditis elegans heparan sulfate
           3-O sulfotransferaseisoform a protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 376 YNINNNKWLHYFDYNNIFFV 317
           Y+++ +KWL YFD  N  FV
Sbjct: 196 YDVHISKWLKYFDLKNFLFV 215


>AF098987-1|AAC67432.1|  276|Caenorhabditis elegans Heparan
           sulphotransferase protein 3 protein.
          Length = 276

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 376 YNINNNKWLHYFDYNNIFFV 317
           Y+++ +KWL YFD  N  FV
Sbjct: 196 YDVHISKWLKYFDLKNFLFV 215


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 186 YSIFVSE*LKYLFYIIYTDYGVQS*LPAIRKSCFSLFYI 70
           YS  ++    Y+ YII   YG+Q  L     SC  LFYI
Sbjct: 184 YSCIIAVLDDYVMYIITVIYGIQVILQLTVSSCV-LFYI 221


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 434  IQKKIQLISPLDKSHRRLFL 375
            + K IQL+SP D SHR + L
Sbjct: 1742 LNKTIQLVSPSDCSHRSMLL 1761


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 434  IQKKIQLISPLDKSHRRLFL 375
            + K IQL+SP D SHR + L
Sbjct: 1742 LNKTIQLVSPSDCSHRSMLL 1761


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,666,175
Number of Sequences: 27780
Number of extensions: 189667
Number of successful extensions: 443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)