Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5h13
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 60 1e-09
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 60 1e-09
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 58 5e-09
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 27 6.7
U97001-6|AAB52257.2| 374|Caenorhabditis elegans Hypothetical pr... 27 6.7
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 27 8.9
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 27 8.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 27 8.9
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL031630-21|CAA20997.2| 736|Caenorhabditis elegans Hypothetical... 27 8.9
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 59.7 bits (138), Expect = 1e-09
Identities = 51/167 (30%), Positives = 69/167 (41%), Gaps = 37/167 (22%)
Frame = +1
Query: 148 CYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRVRYQG-------PCSEGNVGF-PAC- 297
C N VCGTDGKTY NEC L A ++ + V +G PC + GF +C
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGFWGSCV 382
Query: 298 -------------HCDYDLNQVCGSDNHTYD-XXXXXXXXXXTNPGLSILYSGLCA---- 423
C+ + VC ++ T+D T + + + G C
Sbjct: 383 VKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGVC 442
Query: 424 ---DEVK------IVDGPSKYPSCTCTRXMKPVCGSDGITYNNDCLL 537
D K +VDG K +CT K VCGSDG TY+N+C L
Sbjct: 443 ATFDSCKKPQVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRL 489
Score = 49.6 bits (113), Expect = 1e-06
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 41/169 (24%)
Frame = +1
Query: 148 CYRNQRPVCGTDGKTYNNECLL---DCATRDDPGLRVRYQGPCSEGNV------------ 282
C RPVC T+G+T++NEC + C T+ ++V++QG C G
Sbjct: 397 CEDVMRPVCATNGETFDNECEMKKKSCETKSM--IKVKHQGTCGIGVCATFDSCKKPQVC 454
Query: 283 ----GFPAC---HCDYDLNQVCGSDNHTY-DXXXXXXXXXXTNPGLSILYSGLC-ADEVK 435
G P C C + +VCGSD TY + + + Y+ C A ++K
Sbjct: 455 VVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLK 514
Query: 436 ---------IVDGPSKYPSCTCTRXM--------KPVCGSDGITYNNDC 531
V G ++ C C K VCG+DG+TY+++C
Sbjct: 515 KEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSEC 563
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 109 QVIATLAYPPSC---ACYRNQRPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPC 267
QV + P C +C + VCG+DGKTY+NEC L + A + V+Y C
Sbjct: 452 QVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 508
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 133 PPSCACYRNQ--RPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPCSE 273
P C Y + + VCGTDG TY++EC + A + ++G C E
Sbjct: 537 PDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDE 586
Score = 35.1 bits (77), Expect = 0.034
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 460 PSCTCTRXMKPVCGSDGITYNNDCLL 537
P+C + P+CGSDGI YNN C L
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHL 708
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Frame = +1
Query: 418 CADEVKIVDGPSKYPSCTCTRXMK----------PVCGSDGITYNNDCLL 537
C K V PS +P C C + VCGSDG TY+N C L
Sbjct: 845 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCEL 894
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 136 PSCACYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRV 249
P+C N P+CG+DG YNN+C L+ + RD + V
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQREIHV 721
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +1
Query: 445 GPSKYPSCTC----TRXMKPVCGSDGITYNNDCLL 537
G + P C C T VCG+DG TY N+C L
Sbjct: 310 GVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFL 344
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 169 VCGTDGKTYNNECLL 213
VCG+DG TY+N C L
Sbjct: 880 VCGSDGTTYSNLCEL 894
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 59.7 bits (138), Expect = 1e-09
Identities = 51/167 (30%), Positives = 69/167 (41%), Gaps = 37/167 (22%)
Frame = +1
Query: 148 CYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRVRYQG-------PCSEGNVGF-PAC- 297
C N VCGTDGKTY NEC L A ++ + V +G PC + GF +C
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGFWGSCV 390
Query: 298 -------------HCDYDLNQVCGSDNHTYD-XXXXXXXXXXTNPGLSILYSGLCA---- 423
C+ + VC ++ T+D T + + + G C
Sbjct: 391 VKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGVC 450
Query: 424 ---DEVK------IVDGPSKYPSCTCTRXMKPVCGSDGITYNNDCLL 537
D K +VDG K +CT K VCGSDG TY+N+C L
Sbjct: 451 ATFDSCKKPQVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRL 497
Score = 49.6 bits (113), Expect = 1e-06
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 41/169 (24%)
Frame = +1
Query: 148 CYRNQRPVCGTDGKTYNNECLL---DCATRDDPGLRVRYQGPCSEGNV------------ 282
C RPVC T+G+T++NEC + C T+ ++V++QG C G
Sbjct: 405 CEDVMRPVCATNGETFDNECEMKKKSCETKSM--IKVKHQGTCGIGVCATFDSCKKPQVC 462
Query: 283 ----GFPAC---HCDYDLNQVCGSDNHTY-DXXXXXXXXXXTNPGLSILYSGLC-ADEVK 435
G P C C + +VCGSD TY + + + Y+ C A ++K
Sbjct: 463 VVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLK 522
Query: 436 ---------IVDGPSKYPSCTCTRXM--------KPVCGSDGITYNNDC 531
V G ++ C C K VCG+DG+TY+++C
Sbjct: 523 KEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSEC 571
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 109 QVIATLAYPPSC---ACYRNQRPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPC 267
QV + P C +C + VCG+DGKTY+NEC L + A + V+Y C
Sbjct: 460 QVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 516
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 133 PPSCACYRNQ--RPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPCSE 273
P C Y + + VCGTDG TY++EC + A + ++G C E
Sbjct: 545 PDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDE 594
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Frame = +1
Query: 418 CADEVKIVDGPSKYPSCTCTRXMK----------PVCGSDGITYNNDCLL 537
C K V PS +P C C + VCGSDG TY+N C L
Sbjct: 784 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCEL 833
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +1
Query: 445 GPSKYPSCTC----TRXMKPVCGSDGITYNNDCLL 537
G + P C C T VCG+DG TY N+C L
Sbjct: 318 GVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFL 352
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 169 VCGTDGKTYNNECLL 213
VCG+DG TY+N C L
Sbjct: 819 VCGSDGTTYSNLCEL 833
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 57.6 bits (133), Expect = 5e-09
Identities = 43/138 (31%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Frame = +1
Query: 133 PPSCACYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSE----GNVGFPACH 300
PP C C RPVCGTD TYNN C L C R + L Y G C + VG P C
Sbjct: 16 PPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKECEKVGTPICD 75
Query: 301 CDYDLNQVCGSDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCTCTR 480
+ + +D H + L+ L+ G C+ + +CT T
Sbjct: 76 ---NFGETHINDCHFAQFQCIMKKSMGLS--LTKLHMGRCSSK-------DCNHNCTNTE 123
Query: 481 XMKPVCGSDGITYNNDCL 534
PVC ++G Y N C+
Sbjct: 124 -FDPVCDTNGSVYRNLCV 140
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 430 VKIVDGPSKYPSCTCTRXMKPVCGSDGITYNNDCLLTVPQ 549
+ + G S P C C ++PVCG+D +TYNN C L Q
Sbjct: 7 ILLFTGFSPPPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQ 46
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 2/135 (1%)
Frame = +1
Query: 139 SCACYRNQRPVCGTDGKTYNNECLL--DCATRDDPGLRVRYQGPCSEGNVGFPACHCDYD 312
S C + P+CGT+G T+ N C L + + + V Y G C + N C D
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDTN-------CPSD 821
Query: 313 LNQVCGSDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCTCTRXMKP 492
+ VC S T+ L D+ ++ + K + C + P
Sbjct: 822 FSPVCDSKGSTHQNICHFGVKRCI--AERTFGDVLTIDKFEVCN-EVKECNNACPKEYSP 878
Query: 493 VCGSDGITYNNDCLL 537
VC S+G N+C L
Sbjct: 879 VCASNGQNIVNECEL 893
Score = 41.1 bits (92), Expect = 5e-04
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 7/139 (5%)
Frame = +1
Query: 148 CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSE---GNVGFPACHCDYDLN 318
C ++ P+C +D TY N C D L V ++G CSE PA + D +
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSECLDSPCALPAENSP-DES 648
Query: 319 QVCGSDNHTYDXXXXXXXXXXTNPG----LSILYSGLCADEVKIVDGPSKYPSCTCTRXM 486
VC D T G L++ Y G+C V+ D T
Sbjct: 649 FVCLEDQSTKSLCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCD----------TEKP 698
Query: 487 KPVCGSDGITYNNDCLLTV 543
PVC G T+ +C L +
Sbjct: 699 DPVCTDSGATFLTECELNI 717
Score = 38.7 bits (86), Expect = 0.003
Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Frame = +1
Query: 166 PVCGTDGKTYNNECLLD---C--ATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLNQVC- 327
PVC T+G T+ N CL+D C ++ ++V YQG C CD D VC
Sbjct: 931 PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQ-------PCDEDKTPVCD 983
Query: 328 GSDNH--TYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCTCTRXMKPVCG 501
G+ H N LSI YSG C P C VC
Sbjct: 984 GTITHPNICRFRIAQCEAERVNKTLSIAYSGECC----------LLPKGEC-ESSGAVCD 1032
Query: 502 SDGITYNNDCL 534
S+G T+ N C+
Sbjct: 1033 SEGQTHMNHCV 1043
Score = 35.5 bits (78), Expect = 0.025
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Frame = +1
Query: 136 PSCACYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACH--CDY 309
P C + +PVC + G + N C + + E + AC C
Sbjct: 533 PKPNCPTDGQPVCDSAGNLHGNLCEFTYSRCIAASKGHQIHIATEENCISKEACQMPCTD 592
Query: 310 DLNQVCGSDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPS 465
D + +C SD TY+ + L +L+ G C++ +D P P+
Sbjct: 593 DKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE---CLDSPCALPA 641
Score = 31.5 bits (68), Expect = 0.41
Identities = 40/163 (24%), Positives = 58/163 (35%), Gaps = 30/163 (18%)
Frame = +1
Query: 133 PPSCACYRNQR-PVCGTDGKTYNNECLL---DCATR--DDPGLRVRYQGPCSEG------ 276
PP +C + PVC G T+ EC L +C + D P L V QG C +
Sbjct: 688 PPVESCDTEKPDPVCTDSGATFLTECELNIENCKLKKLDQPKLVVVSQGICEKDMLTDDF 747
Query: 277 ---------NVGFP-------ACHCDYDLNQVCGSDNHTYD--XXXXXXXXXXTNPGLSI 402
N+ F + CD + +CG++ T+ N + +
Sbjct: 748 SSNRNFQKPNIEFKRENTFNCSMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEV 807
Query: 403 LYSGLCADEVKIVDGPSKYPSCTCTRXMKPVCGSDGITYNNDC 531
Y+G+C D C PVC S G T+ N C
Sbjct: 808 AYTGMCCD-------------TNCPSDFSPVCDSKGSTHQNIC 837
Score = 30.3 bits (65), Expect = 0.95
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 145 ACYRNQRPVCGTDGKT-------YNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACHC 303
+C + +PVC + G+T +N++C+ D + L + YQG C PA C
Sbjct: 1072 SCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKCC------PA-GC 1124
Query: 304 DYDLNQVCGSDNHTY 348
+L+ +C + Y
Sbjct: 1125 TDELSVICDQHENIY 1139
Score = 29.1 bits (62), Expect = 2.2
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 10/138 (7%)
Frame = +1
Query: 148 CYRNQRPVCGTDGKTYNNEC---LLDCATRDDPG--LRVRYQGPCSEGNVGFPACHCDYD 312
C ++ PVC T +T+ N C C G + + + G C C D
Sbjct: 257 CDKSWDPVCDTRNRTHKNVCQFKFFACKINKIDGSVIDIAHSGACRARKSTCITCPKDEK 316
Query: 313 LNQVCGSDNHTYDXXXXXXXXXXT-----NPGLSILYSGLCADEVKIVDGPSKYPSCTCT 477
+C + N T+ + +++ C + + TC+
Sbjct: 317 KIPICDNRNMTHPTLCSFIQYNCEARNNEDEERVLVHIKSCHERSPQFTLKDEICPRTCS 376
Query: 478 RXMKPVCGSDGITYNNDC 531
R +KPVC T+ N C
Sbjct: 377 RDVKPVCDEANNTHQNLC 394
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 145 ACYRNQRPVCGTDGKTYNNECLLD 216
AC + PVC ++G+ NEC LD
Sbjct: 871 ACPKEYSPVCASNGQNIVNECELD 894
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 39.1 bits (87), Expect = 0.002
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Frame = +1
Query: 139 SCACYRNQRPVCGTDGK---TYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACHCDY 309
+C+C PVC +G TY+N+C+ CA + L + Y+G C A +C+
Sbjct: 24 TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCCS------ARYCNM 77
Query: 310 DLNQVCGSDNHTYDXXXXXXXXXXTNPGLSILYSGLCADEVKIVDGPSKYPSCT--CTRX 483
VC S+ Y + L + + +D + SCT C
Sbjct: 78 FEQPVC-SEGQMYQTVCEFEER-------QCIEFKLFKNHIS-MDSSQEKCSCTAPCPTE 128
Query: 484 MKPVCGSDGITYNNDC 531
PVC G T+ N C
Sbjct: 129 WNPVCDKKGQTHANFC 144
>Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical
protein F53F8.4 protein.
Length = 253
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 130 YPPSCACYRNQRPVCG 177
Y PSCA Y RP CG
Sbjct: 32 YQPSCAAYSQPRPSCG 47
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
protein C05C9.3 protein.
Length = 1225
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = -2
Query: 200 LLYVFPSV-------PHTGRWFL*HAQLGGYASVAITCVAASNIPILKYIVN*YIFLSPS 42
LLY FP + H +W + ++ ++ ++C+ +N+ I +I +I+ SPS
Sbjct: 188 LLYHFPQIILPCIGKKHFKKWDQYYWEVESMSTNTLSCICKNNMGIFMHIQEHFIYKSPS 247
Query: 41 LF 36
F
Sbjct: 248 GF 249
>U97001-6|AAB52257.2| 374|Caenorhabditis elegans Hypothetical
protein K08B12.1 protein.
Length = 374
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 398 LRPGFVAAAQFNRQALSYVWL 336
L P + AAQ+NRQA+ Y +L
Sbjct: 297 LNPAVLTAAQYNRQAMHYRYL 317
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 172 CGTDGKTYNNECLLD-C-ATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLNQVC 327
CG GK N +C+L+ C D G R G C + F H D N +C
Sbjct: 96 CGKHGKCVNGQCILNRCQGVSCDEGSMCR-DGKCEKVLETFCIGHADCGPNMLC 148
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 526 RCCT*YRHCRRPASXRACTCTKGICWG 446
RCCT CR R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 526 RCCT*YRHCRRPASXRACTCTKGICWG 446
RCCT CR R CTC + C G
Sbjct: 97 RCCT---CCRTCCCTRCCTCCRPCCCG 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 526 RCCT*YRHCRRPASXRACTCTKGICWG 446
RCCT CR R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 526 RCCT*YRHCRRPASXRACTCTKGICWG 446
RCCT CR R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 526 RCCT*YRHCRRPASXRACTCTKGICWG 446
RCCT CR R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>AL031630-21|CAA20997.2| 736|Caenorhabditis elegans Hypothetical
protein Y38H6C.20 protein.
Length = 736
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +1
Query: 172 CGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLN-----QVCGSD 336
C + KT EC+LD + V + C++ N F +YD + Q+CG
Sbjct: 237 CEENSKTDQGECVLDMEKAEISRFCVPNRANCTKYNRKFSLTIENYDASVRYGVQICGIL 296
Query: 337 NHTYD 351
+H ++
Sbjct: 297 DHRFE 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,058,137
Number of Sequences: 27780
Number of extensions: 260499
Number of successful extensions: 622
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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