Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5h13
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.004
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.88 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.9 bits (69), Expect = 0.004
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 CYRNQRPVCGTDGKTYNNECLL 213
           C R  RPVC ++GK Y N C L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131



 Score = 27.9 bits (59), Expect = 0.072
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 472 CTRXMKPVCGSDGITYNNDCLL 537
           C R  +PVC S+G  Y N C L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = -2

Query: 521 LYVIPSLPQTGFXSRVHVHEGYLLGPSTILTSSAQRPEYKM------LRPGFVAAAQFNR 360
           LY   SL Q        +   +L G + + T   + P   +      L  GF+A A+ N 
Sbjct: 35  LYRASSLQQRRGGLEYFLLSAFLFGANALFTPGQELPARGLTAVFLGLNLGFLAWAKHNP 94

Query: 359 QALSYVWLSLPH 324
           +    +W  +PH
Sbjct: 95  RGKDALWSLVPH 106


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 237 GIISGGTVEQALVVVCFPISSAHWSL 160
           GI SG +   +LVVV   IS+  W L
Sbjct: 53  GIASGLSAMLSLVVVTVAISTGEWLL 78


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 398 AFCTRAFAQTKSKSWTAPANTL 463
           A  T  + +T++++WT   NTL
Sbjct: 226 AIPTVPYTETETETWTRVFNTL 247


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 186  PISSAHWSLVS 154
            PI+  HW+LVS
Sbjct: 1538 PINEFHWTLVS 1548


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 186  PISSAHWSLVS 154
            PI+  HW+LVS
Sbjct: 1534 PINEFHWTLVS 1544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,215
Number of Sequences: 438
Number of extensions: 3106
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)